User: HG

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HG1.1k
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Posts by HG

<prev • 218 results • page 1 of 22 • next >
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Comment: C: comparing three genomes?
... we are talking here "bacterial genome" not transcriptomes!!!! ...
written 19 months ago by HG1.1k
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Answer: A: Pan- and core- genome in bacteria
... try https://github.com/jasonsahl/LS-BSR ...
written 2.7 years ago by HG1.1k
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Comment: C: How To Improve Whole Genome Assembly Quality
...  Spades already use different k-mer values, by default. I appreciate your PacBio sequencing approach we also followed such a technique now. ...
written 2.7 years ago by HG1.1k
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Comment: C: How To Improve Whole Genome Assembly Quality
... Spades no need quality trimming before run. It can do by default. Yes new version of Spades included BWA. ...
written 2.7 years ago by HG1.1k
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Answer: A: extract sequences from a fasta file and save into different files
... http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/seqretsplit.html seqretsplit <input_fasta> ...
written 2.7 years ago by HG1.1k
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News: In a recent Nature News : "Papers with shorter titles get more citations"
... Papers with shorter titles get more citations: http://www.nature.com/news/papers-with-shorter-titles-get-more-citations-1.18246 ...
news citations written 3.1 years ago by HG1.1k
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Answer: A: pangenome of mycobacterium
... Hi If you have draft/close genome you can do it using LS_BSR  pipeline https://github.com/jasonsahl/LS-BSR ...
written 3.1 years ago by HG1.1k
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Comment: C: Multiple whole genome alignment
... Yes, its need plenty of ram according to your data set. But for such a huge data set core genome alignment will be always better than whole genome alignment. Such as HarvestTools    https://github.com/marbl/harvest-tools could be better choice. ...
written 3.3 years ago by HG1.1k
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Answer: A: Multiple whole genome alignment
... Please have a look  :http://mugsy.sourceforge.net/ http://genome.cshlp.org/content/14/7/1394.short   ...
written 3.3 years ago by HG1.1k
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Comment: C: COG assignment using COGNITOR (COGsoft)
... Hi Dago, Did you solve your problem. If yes could you share some idea how to cluster newly sequence bacterial genome into cluster. ...
written 3.3 years ago by HG1.1k

Latest awards to HG

Popular Question 6 weeks ago, created a question with more than 1,000 views. For In a recent Nature News : "Papers with shorter titles get more citations"
Popular Question 7 weeks ago, created a question with more than 1,000 views. For In a recent Nature News : "Papers with shorter titles get more citations"
Popular Question 7 weeks ago, created a question with more than 1,000 views. For No more hidden solutions in bioinformatics
Popular Question 3 months ago, created a question with more than 1,000 views. For No more hidden solutions in bioinformatics
Popular Question 4 months ago, created a question with more than 1,000 views. For No more hidden solutions in bioinformatics
Popular Question 5 months ago, created a question with more than 1,000 views. For Pacbio Circularizing and trimming error
Great Question 6 months ago, created a question with more than 5,000 views. For How To Grep Largest Contig From A Multi Fasta File
Popular Question 6 months ago, created a question with more than 1,000 views. For How to remove poly G in Nextseq data
Great Question 8 months ago, created a question with more than 5,000 views. For How To Install Sequence Aligners: Blat Gsmapper
Epic Question 9 months ago, created a question with more than 10,000 views. For How To Merge Contigs From Two Different Assembler :
Popular Question 9 months ago, created a question with more than 1,000 views. For How to remove poly G in Nextseq data
Popular Question 11 months ago, created a question with more than 1,000 views. For How to remove poly G in Nextseq data
Popular Question 11 months ago, created a question with more than 1,000 views. For Plasmid Annotation
Popular Question 14 months ago, created a question with more than 1,000 views. For Plasmid Annotation
Good Question 14 months ago, asked a question that was upvoted at least 5 times. For How To Filter Multi Fasta By Length??
Student 15 months ago, asked a question with at least 3 up-votes. For How To Find Suitable Reference Genome After Genome Assembly
Appreciated 16 months ago, created a post with more than 5 votes. For The future of the postdoc
Great Question 18 months ago, created a question with more than 5,000 views. For How To Grep Largest Contig From A Multi Fasta File
Popular Question 18 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 18 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Epic Question 20 months ago, created a question with more than 10,000 views. For How To Filter Multi Fasta By Length??
Epic Question 21 months ago, created a question with more than 10,000 views. For How To Filter Multi Fasta By Length??
Popular Question 21 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 21 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Great Question 21 months ago, created a question with more than 5,000 views. For How To Calculate Gc Content Of Each Contig In A Multifasta File

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