User: HG

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HG1000
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Germany
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19 hours ago
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4 years, 7 months ago
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Posts by HG

<prev • 218 results • page 1 of 22 • next >
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Comment: C: comparing three genomes?
... we are talking here "bacterial genome" not transcriptomes!!!! ...
written 9 months ago by HG1000
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Answer: A: Pan- and core- genome in bacteria
... try https://github.com/jasonsahl/LS-BSR ...
written 23 months ago by HG1000
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Comment: C: How To Improve Whole Genome Assembly Quality
...  Spades already use different k-mer values, by default. I appreciate your PacBio sequencing approach we also followed such a technique now. ...
written 23 months ago by HG1000
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Comment: C: How To Improve Whole Genome Assembly Quality
... Spades no need quality trimming before run. It can do by default. Yes new version of Spades included BWA. ...
written 23 months ago by HG1000
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Answer: A: extract sequences from a fasta file and save into different files
... http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/seqretsplit.html seqretsplit <input_fasta> ...
written 23 months ago by HG1000
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News: In a recent Nature News : "Papers with shorter titles get more citations"
... Papers with shorter titles get more citations: http://www.nature.com/news/papers-with-shorter-titles-get-more-citations-1.18246 ...
news citations written 2.2 years ago by HG1000
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Answer: A: pangenome of mycobacterium
... Hi If you have draft/close genome you can do it using LS_BSR  pipeline https://github.com/jasonsahl/LS-BSR ...
written 2.3 years ago by HG1000
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Comment: C: Multiple whole genome alignment
... Yes, its need plenty of ram according to your data set. But for such a huge data set core genome alignment will be always better than whole genome alignment. Such as HarvestTools    https://github.com/marbl/harvest-tools could be better choice. ...
written 2.5 years ago by HG1000
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Answer: A: Multiple whole genome alignment
... Please have a look  :http://mugsy.sourceforge.net/ http://genome.cshlp.org/content/14/7/1394.short   ...
written 2.5 years ago by HG1000
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Comment: C: COG assignment using COGNITOR (COGsoft)
... Hi Dago, Did you solve your problem. If yes could you share some idea how to cluster newly sequence bacterial genome into cluster. ...
written 2.5 years ago by HG1000

Latest awards to HG

Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to remove poly G in Nextseq data
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Plasmid Annotation
Popular Question 4 months ago, created a question with more than 1,000 views. For Plasmid Annotation
Good Question 4 months ago, asked a question that was upvoted at least 5 times. For How To Filter Multi Fasta By Length??
Student 5 months ago, asked a question with at least 3 up-votes. For How To Find Suitable Reference Genome After Genome Assembly
Appreciated 6 months ago, created a post with more than 5 votes. For The future of the postdoc
Great Question 8 months ago, created a question with more than 5,000 views. For How To Grep Largest Contig From A Multi Fasta File
Popular Question 8 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 8 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Epic Question 10 months ago, created a question with more than 10,000 views. For How To Filter Multi Fasta By Length??
Epic Question 11 months ago, created a question with more than 10,000 views. For How To Filter Multi Fasta By Length??
Popular Question 11 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 11 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Great Question 12 months ago, created a question with more than 5,000 views. For How To Calculate Gc Content Of Each Contig In A Multifasta File
Popular Question 12 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 12 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 12 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Guru 13 months ago, received more than 100 upvotes.
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Scale Down "Depth Of Coverage"
Popular Question 13 months ago, created a question with more than 1,000 views. For Genome Assembly +Annotation Pipeline
Popular Question 13 months ago, created a question with more than 1,000 views. For Genome Assembly +Annotation Pipeline
Student 14 months ago, asked a question with at least 3 up-votes. For How To Filter Multi Fasta By Length??
Popular Question 15 months ago, created a question with more than 1,000 views. For How to remove poly G in Nextseq data
Popular Question 15 months ago, created a question with more than 1,000 views. For Genome Assembly +Annotation Pipeline

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