User: marcodpc

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marcodpc30
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Posts by marcodpc

<prev • 11 results • page 1 of 2 • next >
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Comment: C: Compare Ngs Genome Viewer And Annotation Tool: Igv, Savant, Artemis
... you are right! I forgot to tell you that i'm interesting to IT features ...
written 5.7 years ago by marcodpc30
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Comment: C: Compare Ngs Genome Viewer And Annotation Tool: Igv, Savant, Artemis
... thanks for response. Can u tell me substantial differences that you refer ? ...
written 5.7 years ago by marcodpc30
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Compare Ngs Genome Viewer And Annotation Tool: Igv, Savant, Artemis
... Is it correct the following table that compare IGV, Savant, Artemis ? https://dl.dropboxusercontent.com/u/32010561/cmp.jpg If u have any suggestion for other features or corrections please tell me. Thanks ps: sorry I'm not a biologist ...
viewer annotation ngs igv written 5.7 years ago by marcodpc30
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Comment: C: Other Genomic Viewer Like Igv
... is IGV the most used ? I try to use Savant... but it isn't so intuitive... I read biostar post with compares, but I need to justify the use of IGV... ...
written 6.0 years ago by marcodpc30
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Comment: C: Other Genomic Viewer Like Igv
... I mean "like" as: client side, java, non-crashing but also intuitive, usable, reliable. ...
written 6.0 years ago by marcodpc30
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Answer: A: Reduce Bam File With Specific Loci In Bedfile
... I easily solved with BEDtools intersectBed -abam file.bam -b test.bed > reduced.bam ...
written 6.0 years ago by marcodpc30
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Reduce Bam File With Specific Loci In Bedfile
... I want to reduce my bam file, obtaining a new bam file that contain only loci in the bed file in input like chr1 30498890 34983248 chr2 30398890 31483248 chr3 10492890 14983248 chr4 30492890 34283248 I try with: samtools view -L test.bed test.bam | awk '$2 != 4 {print}' and intersectBed ...
bam written 6.0 years ago by marcodpc30 • updated 2.6 years ago by Biostar ♦♦ 20
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Ngs Tool Analysis For Snp&Indel Calling Of Pooling Data
... What are the best and most used analysis tool actually, for SNP and indel calling of pooled data? I'm using: GATK Freebayes that have specified options for data in pool. Now I have found CRISP. Are there others and good tool that I ignore ? thanks! ...
indel ngs tool snp written 6.0 years ago by marcodpc30 • updated 6.0 years ago by Zev.Kronenberg11k
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Other Genomic Viewer Like Igv
... Are there other genomic viewer like IGV ? ...
viewer genomic igv written 6.0 years ago by marcodpc30 • updated 3.0 years ago by Biostar ♦♦ 20
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Answer: A: Illumina Ngs Test Data For Snp/Indel Calling And Association Study
... If I use 1000genome data, can I simulate pooled sample in some way and generate in it SNP&indel ? ...
written 6.1 years ago by marcodpc30

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