User: jjp55

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jjp550
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Posts by jjp55

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Bowtie2 cannot find references
... Hi All, I am trying to align my paired-end ChIP seq data to the Arabidopsis genome (TAIR10), but am not able to do so with Bowtie2 because it keeps saying it "does not exist or is not a Bowtie 2 index" I downloaded the file from the bowtie website and the folder has the six .bt2 files as expected. ...
next-gen chip-seq sequencing written 1 day ago by jjp550
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Parallel and Trim Galore
... Hi all. I am trying to get my code to work but it appears to have a bug somewhere and Trim_Galore is not reading the loop how I want it to. I have paired-end sequencing reads My code is: parallel --plus 'trim_galore --stringency 3 --paired {...}.fastq.gz {...}R2.fastq.qz' ::: *fastq.qz My c ...
sequence next-gen chip-seq written 3 days ago by jjp550 • updated 3 days ago by ATpoint40k

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