Posts by xwwang
... In my experience, you can use the multiple threads to speed up via the -t option: -t $nthread where $nthread is the number of threads, e.g. 10 In this way, it will be much fast. It took me one day for 200 million paired-end reads to map to a large graph. ...
... Is there any way to do a vg mapping comparison: Two vg gam files: 1. one from the flat graph constructed from a ref genome only 2. another graph constructed from a ref genome and variants after mapping, the same set of reads were mapped to either graph with "vg map", I would like to see how muc ...
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