User: xwwang

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xwwang10
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Location:
Gerogia , USA
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Last seen:
2 days, 19 hours ago
Joined:
6 days, 17 hours ago
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Posts by xwwang

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Answer: A: vg paired end short read mapping: Best practice?
... In my experience, you can use the multiple threads to speed up via the -t option: -t $nthread where $nthread is the number of threads, e.g. 10 In this way, it will be much fast. It took me one day for 200 million paired-end reads to map to a large graph. ...
written 6 days ago by xwwang10
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vg mapping comparison: graph vs flat graph
... Is there any way to do a vg mapping comparison: Two vg gam files: 1. one from the flat graph constructed from a ref genome only 2. another graph constructed from a ref genome and variants after mapping, the same set of reads were mapped to either graph with "vg map", I would like to see how muc ...
mapping improvement vg written 6 days ago by xwwang10

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