User: essell22

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essell2210
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United States
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6 years, 4 months ago
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7 years, 6 months ago
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Posts by essell22

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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
... The last part: exonic.gene.sizes <- lapply(exons.list.per.gene,function(x){sum(width(reduce(x)))}) Seems to be taking extraordinarily long to run. Any faster method? ...
written 6.4 years ago by essell2210
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Ensembl Annotation
... I'm looking to annotate my genomic data that is in a bed-like format ex. > Chr1 200 4000 ... I would like to use Ensembl to annotate my data and append the overlapping transcripts, genes, and genomic features (i.e. promoters, exons, introns... ) to my original file. ex: > Chr1 ...
ensembl annotation python written 7.6 years ago by essell2210 • updated 4.5 years ago by Biostar ♦♦ 20
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Run Methylkit Analysis Sequentially On Several Comparisons And Contexts
... I'm realatively new to R (having only used it interactively in R studio before) and have never written an R script before. I'm using the MethylKit package to analyze many files and would like to write a script that would run through my comparisons sequentially. My current script looks like: librar ...
R written 7.6 years ago by essell2210 • updated 7.3 years ago by Charles Warden7.9k

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