User: k2bhide

gravatar for k2bhide
k2bhide70
Reputation:
70
Status:
Trusted
Location:
United States
Last seen:
3 months, 1 week ago
Joined:
5 years, 10 months ago
Email:
k******@gmail.com

I work as Bioinformatician in Bioinformatics Core at Purdue University.

Posts by k2bhide

<prev • 10 results • page 1 of 1 • next >
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How to perform statistical analysis of label free experiment using results from Proteome Discoverer?
... Hello, I would like to know tools to perform ANOVA like statistical test for multiple group comparison based on results from Proteome Discoverer (PD) for label free experiment (version 2.2) Secondly I would also like to know whether log2 normalized raw abundances generated by PD is preferable to p ...
proteomics label free proteome discoverer written 3 months ago by k2bhide70
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Comment: C: Solution To Find Out Read Orientation As Well As Strand To Which Reads Align Fro
... I have to check with people at core outside to know which aligner they use. I will get back to you once I have the information. ...
written 5.3 years ago by k2bhide70
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Comment: C: Solution To Find Out Read Orientation As Well As Strand To Which Reads Align Fro
... By special tags do you mean bitwise flags or cigar strings? ...
written 5.3 years ago by k2bhide70
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Comment: C: Solution To Find Out Read Orientation As Well As Strand To Which Reads Align Fro
... I have paired end strand specific RNASeq data from Yeast ...
written 5.3 years ago by k2bhide70
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Solution To Find Out Read Orientation As Well As Strand To Which Reads Align From Sam File
... Hello all, I have sam files from strand specific RNASeq (generated from SOLiD platform). I would like to separate reads by forward and reverse orientation as well as by the strand to which they align. Is it possible to get this information from sam file (bitwise flags) or cigar strings ...
sam written 5.3 years ago by k2bhide70 • updated 5.3 years ago by Biomonika (Noolean)3.0k
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Comment: C: Represent Rnaseq Figure Similar To One Represented In Paper
... Thank you Ben for sharing your R code. It looks exactly as in the figure I wanted. I would definitely try this for my dataset and post if any additional questions. ...
written 5.5 years ago by k2bhide70
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Comment: C: Represent Rnaseq Figure Similar To One Represented In Paper
... Sorry the clickable link failed to work before. However I have put the figure now. It is same figure mentioned by #dpryan79. I would like to know how to generate similar figure. Thank you Ketaki ...
written 5.5 years ago by k2bhide70
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Represent Rnaseq Figure Similar To One Represented In Paper
... Hello all, I would like to know which software or tool can be used to generate figure similar to one mentioned below The figure is taken from following reference paper: Decapping of Long Noncoding RNAs Regulates Inducible Genes - Sarah Geisler et al Any help in this regard is really ...
rnaseq written 5.5 years ago by k2bhide70 • updated 5.5 years ago by Ben2.0k
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Tool Or Software To Determing Tag Redundancy (Summary Of Library Complexity)
... Hello all, This is Ketaki Bhide from Purdue University. I tried to use ALEXA-seq to find Summary of library complexity - estimated by tag redundancy per million reads for some of my fastq files. However was not able to use ALEXA-seq since I failed to have resources to set up required web ...
library written 5.6 years ago by k2bhide70 • updated 5.6 years ago by Malachi Griffith17k
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Generate Mapping/Genetic Map Positions From Physical Position In Case Of Soybena Snps
... Dear all, I would like to get the genetic/mapping position from physical position of small set of Soybean SNPs. What I have is: list of SNPs with their physical position in Hapmap file format My aim is generate genetic map of Soybean using SNPs. I would appreciate if anyone would let me know th ...
map snp written 5.8 years ago by k2bhide70 • updated 3.6 years ago by ice4prince10

Latest awards to k2bhide

Popular Question 4.7 years ago, created a question with more than 1,000 views. For Represent Rnaseq Figure Similar To One Represented In Paper
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Tool Or Software To Determing Tag Redundancy (Summary Of Library Complexity)
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Generate Mapping/Genetic Map Positions From Physical Position In Case Of Soybena Snps
Student 5.0 years ago, asked a question with at least 3 up-votes. For Represent Rnaseq Figure Similar To One Represented In Paper

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