User: bbmisraccb

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bbmisraccb40
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Posts by bbmisraccb

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Publicly-available Metabolomics Data
... Hello, I guess, it is functional- I see everything alright- may be a temporary glitch? Also, start with "search" box or for studies: http://www.ebi.ac.uk/metabolights/studies Another note: I did not mention MetabolomeXchange as it is a mirror site/ aggregator for MetaboLights, MetabolomicsWorkBench ...
written 2.3 years ago by bbmisraccb40
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Answer: A: Publicly-available Metabolomics Data
... Hello, Of course!!! Like **NCBI/DDBJ**- for Genes, Genomes, Transcriptomes and **PRIDE** for Proteomics/ Proteins, there are **Major 3** such databases/ archives/ repositories for "metabolomics" data sets: **MetaboLights, MetabolomicsWorkbench, and GNPS/Massive**. You have to search these for "pl ...
written 2.3 years ago by bbmisraccb40
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Comment: C: Novel miRNA taregt gene prediction tool?
... Thanks a lot. Seems useful. : ) ...
written 3.4 years ago by bbmisraccb40
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Novel miRNA taregt gene prediction tool?
... Hello all, What tools and resources available to find the "target" gene list for a "list of predicted (100s) miRNAs" generated from a novel miRNA detection workflow in a novel biological system. Do not have miRBase or other DBs equivalence (and hence novel)! Tools do exist to predict one by one, b ...
webserver prediction tool mirna target written 3.4 years ago by bbmisraccb40 • updated 2.3 years ago by Biostar ♦♦ 20
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Answer: A: To the Biologists out there: What bioinf tool are you missing?
... Covert ALL or MOST "R" packages to a good GUI and press-button easy to use, high through put softwares, web servers and softwares that will run on Windows- for biologists. In dire need of those. Open source statistical packages. Anything related to Metabolomics data analysis from various mass-spec ...
written 3.4 years ago by bbmisraccb40
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ID Conversion within ENSEMBL?
... Hello, I have these ENSEMBL IDs: ENSCSAG00000010073, ENSCSAG00000013647 and so on for 1000s. These are different from the regular human =Ensembl identifiers (ENSG, ENST, ENSP) for gene, transcripts, proteins etc. My species is CS so that is understandable- but how to get the identifiers for the hu ...
species ensembl id conversion written 3.4 years ago by bbmisraccb40 • updated 3.4 years ago by Denise - Open Targets5.0k
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Answer: A: Is there any databases provide proteomic or metabolomic raw data sets?
... MetabolomicsWorkbench: http://www.metabolomicsworkbench.org/data/browse.php is a huge resource too. Most biomedical/ human data sets. ...
written 3.5 years ago by bbmisraccb40
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How to implement a 'commerical' mass spectrometry data processing software on to a Galaxy running on a HPC server/ cluster (to faciliate batch processing)?
... Hello, I want to run a commercial mass-spectrometry software (from GC-MS, LC-MS instrument vendors) on a cluster and also integrate into our existing Galaxy server! Computational load wise the server is huge and have sufficient capabilities. We have personnel who can do it but need to suggest them/ ...
server hpc automation galaxy software written 3.5 years ago by bbmisraccb40 • updated 3.5 years ago by genomax75k
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For microarrays and -omics data sets (where, samples <<< genes/proteins) out of several classification algorithms, which is efficient ?
... For microarrays and -omics data sets (where, samples <<< genes/proteins) out of several classification algorithms, which is efficient ? So, out of existing classification algorithms such as Support Vector Machine (SVM), K-nearest neighbor (KNN), Interval Valued Classification (IVC) and the ...
ivpso svm algorithm knn ivc written 4.7 years ago by bbmisraccb40

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