User: bbmisraccb

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bbmisraccb60
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Posts by bbmisraccb

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Any recommendation for pathway analysis of Wheat RNA-seq data?
... And, sure not an ID conversion issue? Strange that AgriGO would not map any plant DEGs for GO analysis. ...
written 10 weeks ago by bbmisraccb60
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Answer: A: how to find a pathway using a set of metabolites
... Hi, Try FELLA: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2487-5 and/ or Lilikoi: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6290884/ both on CRAN, and are new and active ones! Thanks, ...
written 10 weeks ago by bbmisraccb60
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Answer: A: Multi omics dataset analyses, where to start? And methods to use?
... Hi, In our Review entitled: "Integrated omics: tools, advances and future approaches: https://jme.bioscientifica.com/view/journals/jme/62/1/JME-18-0055.xml we have provided the list of ALL multi-omics/ integrated omics tools "Table 1: List of various tools, software, statistical approaches and dat ...
written 10 weeks ago by bbmisraccb60
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Comment: C: Publicly-available Metabolomics Data
... Hello, I guess, it is functional- I see everything alright- may be a temporary glitch? Also, start with "search" box or for studies: http://www.ebi.ac.uk/metabolights/studies Another note: I did not mention MetabolomeXchange as it is a mirror site/ aggregator for MetaboLights, MetabolomicsWorkBench ...
written 2.5 years ago by bbmisraccb60
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Answer: A: Publicly-available Metabolomics Data
... Hello, Of course!!! Like **NCBI/DDBJ**- for Genes, Genomes, Transcriptomes and **PRIDE** for Proteomics/ Proteins, there are **Major 3** such databases/ archives/ repositories for "metabolomics" data sets: **MetaboLights, MetabolomicsWorkbench, and GNPS/Massive**. You have to search these for "pl ...
written 2.5 years ago by bbmisraccb60
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Comment: C: Novel miRNA taregt gene prediction tool?
... Thanks a lot. Seems useful. : ) ...
written 3.6 years ago by bbmisraccb60
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Novel miRNA taregt gene prediction tool?
... Hello all, What tools and resources available to find the "target" gene list for a "list of predicted (100s) miRNAs" generated from a novel miRNA detection workflow in a novel biological system. Do not have miRBase or other DBs equivalence (and hence novel)! Tools do exist to predict one by one, b ...
webserver prediction tool mirna target written 3.6 years ago by bbmisraccb60 • updated 2.5 years ago by Biostar ♦♦ 20
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Answer: A: To the Biologists out there: What bioinf tool are you missing?
... Covert ALL or MOST "R" packages to a good GUI and press-button easy to use, high through put softwares, web servers and softwares that will run on Windows- for biologists. In dire need of those. Open source statistical packages. Anything related to Metabolomics data analysis from various mass-spec ...
written 3.6 years ago by bbmisraccb60
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ID Conversion within ENSEMBL?
... Hello, I have these ENSEMBL IDs: ENSCSAG00000010073, ENSCSAG00000013647 and so on for 1000s. These are different from the regular human =Ensembl identifiers (ENSG, ENST, ENSP) for gene, transcripts, proteins etc. My species is CS so that is understandable- but how to get the identifiers for the hu ...
species ensembl id conversion written 3.6 years ago by bbmisraccb60 • updated 3.6 years ago by Denise - Open Targets5.1k
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Answer: A: Is there any databases provide proteomic or metabolomic raw data sets?
... MetabolomicsWorkbench: http://www.metabolomicsworkbench.org/data/browse.php is a huge resource too. Most biomedical/ human data sets. ...
written 3.7 years ago by bbmisraccb60

Latest awards to bbmisraccb

Popular Question 2.5 years ago, created a question with more than 1,000 views. For ID Conversion within ENSEMBL?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Novel miRNA taregt gene prediction tool?
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Publicly-available Metabolomics Data

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