User: szp770

gravatar for szp770
szp7700
Reputation:
0
Status:
New User
Last seen:
5 days, 7 hours ago
Joined:
3 months, 3 weeks ago
Email:
s*****@my.utsa.edu

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by szp770

<prev • 21 results • page 1 of 3 • next >
0
votes
0
answers
97
views
0
answers
how to use python pandas to create a matrix for heatmap plotting
... Hi, all. Now I have a interaction file like this: the last column shows the read counts chr8 10000 15000 chr8 10000 15000 3 chr8 20000 25000 chr8 20000 25000 4 chr8 25000 30000 chr8 25000 300 ...
python next-gen rna-seq sequencing written 22 days ago by szp7700
0
votes
4
answers
216
views
4
answers
Comment: C: how to combine two bed files using the same ID information
... Hey, what if I add the 5th column to each file and still want to join by the same 4th column value and reserve the 5th column information in the final result? Thanks! ...
written 7 weeks ago by szp7700
0
votes
3
answers
177
views
3
answers
Answer: A: How to convert columns to rows(seperated by comma) in Python(or R,linux)
... ok, I got an answer: lis=[] for line in lines: line=line.strip('\n') lis.append(line) print(','.join(lis)) ...
written 8 weeks ago by szp7700 • updated 8 weeks ago by Ram32k
0
votes
3
answers
177
views
3
answers
Comment: C: How to convert columns to rows(seperated by comma) in Python(or R,linux)
... Hi, I tried this with python. ``` line.replace('\n',',').strip() ``` the result is like this: ``` ENCFF720NRD_POLR2G, 0.492022341246791, 0.49432683771391, 0.498306209291954, 0.499462572697776, 0.501878178815989, 0.505310232483092, 0.50580816832688, 0.508190853066991, 0.515285410047909, ``` these n ...
written 8 weeks ago by szp7700
0
votes
0
answers
128
views
0
answers
(Closed) A specific problem to range data within R(or linux,python)
... Hi, all. I have a set of data like this: ``` a,0.1,0.4,1.5,1.8,1.2,0.8,0.5,0.2 b,0.4,0.9,1.1,0.3,0.1 c,0.5,0.7,1.9,2.5,2.2,0.7,0.2 ``` which is every variable(here---a,b,c) has a set of values and there must be a man value in the middle(here for a,b,c--1.8,1.1,2.5 in the middle), I want to make th ...
R python rna-seq seq linux written 8 weeks ago by szp7700
2
votes
3
answers
177
views
3
answers
How to convert columns to rows(seperated by comma) in Python(or R,linux)
... Hi, all. Now I have a column of data seperated by '\n'. ``` ENCFF720NRD_POLR2G 0.492022341246791 0.49432683771391 0.498306209291954 0.499462572697776 0.501878178815989 0.505310232483092 0.50580816832688 0.508190853066991 0.515285410047909 0.520515793993818 0.527918988894439 0.539824182250468 0.5493 ...
R linux python seq sequencing written 8 weeks ago by szp7700 • updated 8 weeks ago by Mensur Dlakic9.0k
0
votes
4
answers
216
views
4
answers
Comment: C: how to combine two bed files using the same ID information
... That's really succint! ...
written 9 weeks ago by szp7700
0
votes
4
answers
216
views
4
answers
Comment: C: how to combine two bed files using the same ID information
... That's really helpful, Thanks so much! ...
written 9 weeks ago by szp7700
0
votes
4
answers
216
views
5 follow
4
answers
how to combine two bed files using the same ID information
... Hi, now I have two bed files. Each have four columuns, and the fourth column has the uniq ID for each row, each file has thousands of rows. Now I want to combine row of the two files if the rows have the same ID, the final output should like this: ``` chr1 10028 10029 chr14 68314662 ...
bed linux shell python written 9 weeks ago by szp7700 • updated 9 weeks ago by Alex Reynolds31k
0
votes
1
answer
314
views
1
answer
How to use python to rename files in a folder with known prefix, prefix are in excel?
... all. I want to rename 970 files in a folder. The name is like this "ENCFF207HQD.bam" and so on. And the prefix I want to use is in an excel. The existing prefix is in the second column, and the prefix I want to use is in the third column, How to use information in the excel to rename all the files c ...
rename R next-gen file python written 9 weeks ago by szp7700

Latest awards to szp770

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1142 users visited in the last hour
_