User: julie_dddd

gravatar for julie_dddd
julie_dddd10
Reputation:
10
Status:
New User
Location:
Last seen:
1 day ago
Joined:
1 week, 3 days ago
Email:
j*************@hotmail.com

Posts by julie_dddd

<prev • 5 results • page 1 of 1 • next >
1
vote
1
answer
50
views
1
answer
Experiment vs. assay vs. run vs. sample
... Hi, I'm very new to bioinformatics and try to grasp the basic concepts. In my course notes I encounter terms as "experiment", "runs", "assays", "samples", ... and I have the expression they can be used interchangeably. However, I would like to know the difference & when to use what. Ideally, c ...
run experiment assay sequencing written 1 day ago by julie_dddd10 • updated 1 day ago by Jeremy Leipzig19k
0
votes
1
answer
90
views
1
answers
Comment: C: multiple samples differential expression analysis
... Okay, thanks! I understand. But how do I know which accession number I take, because there are ERX (for experiments), ERS (for samples), and ERR (for runs). Now, I took 3 ERX (ulcerative colitis) and 3 ERX numbers (normal patients). Are there major differences or how do I need to interpret this? ...
written 9 days ago by julie_dddd10
0
votes
1
answer
90
views
1
answer
multiple samples differential expression analysis
... I have all these different samples and I want to do differential expression analysis: see which genes are differentially expressed in samples from healthy vs. ulcerative colitis patients. I use following samples: https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7860/samples/ However, I don't ...
fastq kallisto differential expression written 9 days ago by julie_dddd10 • updated 9 days ago by swbarnes29.1k
0
votes
1
answer
82
views
1
answers
Comment: C: Kallisto output No target IDs
... My FASTA looks as follows : https://ibb.co/MgVW1BS I think I can't just remove the header? ...
written 10 days ago by julie_dddd10
0
votes
1
answer
82
views
1
answer
Kallisto output No target IDs
... I have some Kallisto output, and I want to apply tximport on the abundance.tsv file. However, I don't understand why my output is like this, not having target IDs, while using correctly how the manual prescribed: kallisto quant -b 10 -i Homo_sapiens_index -o ERX3307771_quant -t 1 --single -l 51 -s ...
kallisto rna-seq written 10 days ago by julie_dddd10

Latest awards to julie_dddd

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2149 users visited in the last hour