User: adampepper313

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Posts by adampepper313

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update Trinity -> v2.11.0
... Hi, I am working on a project and I need to use Trinity, but whenever try to run `Trinity`, I am constantly receiving an update message: ** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: https://github.com/trinityrnaseq/trinityrnaseq/releases Followed by, Trinity Tr ...
software error assembly rna-seq trinity written 1 day ago by adampepper3130
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Comment: C: How should I begin to assemble my transcripts?
... Hi @genomax, The reads that I have in my fastq file as I have previously mentioned are paired-end reads from a previously unsequenced transcriptome animal species with read length 80 and insert size 300. Would these two files require and prior modification before running it through Trinity? ...
written 1 day ago by adampepper3130
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Comment: C: How should I begin to assemble my transcripts?
... Hi @MichaelDondrup, I tried to run `Trinity`, but I am constantly receiving an update message: ** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: https://github.com/trinityrnaseq/trinityrnaseq/releases Followed by, Trinity Trinity-v2.11.0 requires salmon to be instal ...
written 1 day ago by adampepper3130
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Comment: C: How should I begin to assemble my transcripts?
... Although that would have been a much easier alternative, I must carry everything out on command-line. ...
written 1 day ago by adampepper3130
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Comment: C: How should I begin to assemble my transcripts?
... Hi @MichaelDondrup, Thanks so much for your help! I did try running Trinity, but the command continuously keeps ending. I’m receiving this message: ** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: website which: no salmon in (/usr/local/trinityrnaseq-v2.11.0) And th ...
written 2 days ago by adampepper3130
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How should I begin to assemble my transcripts?
... Hi, I am working on a project and I have two paired-end reads ending in `.fq`. My question is, I wish to assemble the transcripts and to begin that I tried to use `Trinity`. But I don’t feel like I am on the right track, any suggestions would very munch appreciated!! I am running my project on com ...
assembly rna-seq sequencing written 2 days ago by adampepper3130 • updated 2 days ago by Michael Dondrup48k
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Creating a fasta filter by gene length
... Hi I am working on a project and am wanting to write a command that calculates the length of my gene and outputs those genes with a length shorter than my setting point written in the command line. I am writing my code within nano and executing it using python within a command line. This is my cod ...
gene python sequencing written 7 days ago by adampepper3130 • updated 7 days ago by Renesh1.9k

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