User: ugly.betty77

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Posts by ugly.betty77

<prev • 85 results • page 1 of 9 • next >
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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module
... Hello all, I am building a number of online virtual classroom-based modules for researchers working on biological data. The description for the first one is attached below, and I will have a beta test starting Sept 14. Please feel free to pass to anyone interested. The beta test is free, and all co ...
perl python class tutorial go written 3.1 years ago by ugly.betty771.0k
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Answer: A: ENCODE 2015: Research Applications and Users Meeting
... This is a great opportunity to point out that John Stamatoyannopoulos never responded to the paper by Guangzhou researchers on his 'duon' claim. The Chinese are too much beneath him, I guess. http://www.homolog.us/blogs/blog/2015/04/06/guangzhou-researcher-debunks-duon-discovery-of-stamatoyannopoul ...
written 3.3 years ago by ugly.betty771.0k
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Comment: C: Free draft copy of book on bioinformatics tools
... Thank you for the great suggestions !! I agree about your comment on PHYLIP, and decided to keep it as a placeholder until finding enough time to check other options and find something better. Do you have any suggestion? ...
written 3.3 years ago by ugly.betty771.0k
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Comment: C: Free draft copy of book on bioinformatics tools
... Thanks Alex for the suggestion. Let me look into that. ...
written 3.3 years ago by ugly.betty771.0k
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Comment: C: Free draft copy of book on bioinformatics tools
... arnstrm, The book can be updated any time and readers can download the new version for free. So, changing options is not a problem (except it takes my time).  Moreover, the idea is to give newcomers some place to start from, not give a total package describing everything in a program. I am not try ...
written 3.3 years ago by ugly.betty771.0k
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News: Free draft copy of book on bioinformatics tools
... Hello all, I am putting together an ebook to describe a number of useful bioinformatics tools. The book is under development, and V0.1 is freely available at the following link. https://leanpub.com/pandoras-toolbox [In fact, if you grab V0.1, all updates will also be freely available to you based ...
assembly news next-gen rna-seq alignment written 3.3 years ago by ugly.betty771.0k • updated 3.3 years ago by h.mon19k
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Comment: C: Pandora's Toolbox - a collection of bioinformatics programs
... Rob, There needs to be some balance between elegance of coding and ease of use. It is often hard to make biologists learn and use new programs. If you introduce difficulty of compilation or other factors, even that small pool of early users are gone. I would recommend you to write sailfish without ...
written 3.7 years ago by ugly.betty771.0k
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Comment: C: Pandora's Toolbox - a collection of bioinformatics programs
... "most of those you've listed (all?) are already packaged" I will go for the third possibility - 'very few' :) Biolinux seems to have avoided most assembly-related programs. ...
written 3.7 years ago by ugly.betty771.0k
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Comment: C: Pandora's Toolbox - a collection of bioinformatics programs
... I have been through the codes of most of the mentioned programs. Some are indeed quite small (both source code and executables) and some others are unnecessarily big. On top of that, some of the big ones are using Boost in many different ways, and that makes my life very difficult, when I have to co ...
written 3.7 years ago by ugly.betty771.0k
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Comment: C: Pandora's Toolbox - a collection of bioinformatics programs
... Thanks everyone. The Docker suggestion is excellent and let me look into it. Regarding the benefit of providing code and making them accessible at one place - (i) many of these programs are not available at github, (ii) I like to mix and match some of these codes, or further develop them. Current ...
written 3.7 years ago by ugly.betty771.0k

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