User: Lhl

gravatar for Lhl
Lhl730
Reputation:
730
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Trusted
Location:
United States
Last seen:
1 year, 6 months ago
Joined:
8 years, 3 months ago
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level B 

Posts by Lhl

<prev • 109 results • page 1 of 11 • next >
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Answer: A: Should I Fix Branch Length In Paml Analyses?
... Have you sorted out? ...
written 18 months ago by Lhl730
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Comment: C: OrthoMCL: How to parse groups.txt for a phylogeny?
... Hi Apelin20. I am doing the same thing to orthomcl2.0 output -- groups.txt. Have you, by any chance,, found any other way of processing the output for downstream analyses? ...
written 23 months ago by Lhl730
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Answer: A: MCScanX Error - Can't plot the graphs (Downstream analysis)
... I ran into the same error, I wonder if you have solved the issue. ...
written 24 months ago by Lhl730
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Answer: A: How To Concatenate Blast Results (M8) Via Setting Threshold Of Distance Between
... Have you tried genBlastA/G ? (She et al., 2011) genBlastG: using BLAST searches to build homologous gene models. Bioinformatics. ...
written 2.2 years ago by Lhl730
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Answer: A: Convert kegg ids to uniprot ids
... If you want to do this locally, you can download idmapping file form Uniprot ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/. Then with some simple awk/grep unix commands or a couple of python/perl scripts, you will be able to extract uniprot id(s) of the corresp ...
written 2.2 years ago by Lhl730
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Answer: A: Convert kegg ids to uniprot ids
... 1. KEGG mapper convert ID http://www.genome.jp/kegg/tool/conv_id.html 2. uniprot Retrieve/ID mapping www.uniprot.org/uploadlists ...
written 2.3 years ago by Lhl730
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Answer: A: Blast E Value Calculation
... have a read of this http://homepages.ulb.ac.be/~dgonze/TEACHING/stat_scores.pdf ...
written 2.4 years ago by Lhl730
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Comment: C: Best Genome Browser To Look At Structural Variation Calls
... what is the command used to create this picture? Thanks. Elzed ...
written 3.7 years ago by Lhl730
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Comment: C: Splice Junction file intersection with genome annotation
... I think its STAR ...
written 3.8 years ago by Lhl730
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Comment: C: Strand-specific vs. non-strand-specific RNAseq
... STAR manual says 'If you have stranded RNA-seq data, you do not need to use any specific STAR options.' i do not understand how it distinguishes between SS Lib and Non-SS lib.   ...
written 3.8 years ago by Lhl730

Latest awards to Lhl

Great Question 23 months ago, created a question with more than 5,000 views. For Is It Possible To Extract From Ncbi Nr Database Plant Protein Sequences.?
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Epic Question 2.3 years ago, created a question with more than 10,000 views. For Tools Parsing Ncbi Blast -M 7 Xml Output Format?
Appreciated 2.3 years ago, created a post with more than 5 votes. For How To Deal With Un-Used Reads After De Novo Assembly?
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Extract Sub_Tree From Big Phylogeny
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Popular Question 4.9 years ago, created a question with more than 1,000 views. For Is It Possible To Extract From Ncbi Nr Database Plant Protein Sequences.?
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Student 4.9 years ago, asked a question with at least 3 up-votes. For Can Rnaseq Reads Be Used For Genome Assembly
Student 4.9 years ago, asked a question with at least 3 up-votes. For Tools Parsing Ncbi Blast -M 7 Xml Output Format?
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