User: Zee

gravatar for Zee
Zee20
Reputation:
20
Status:
New User
Location:
Malaysia
Website:
http://www.novocraft.com
Last seen:
1 year, 6 months ago
Joined:
7 years, 8 months ago
Email:
z*************@gmail.com

Posts by Zee

<prev • 5 results • page 1 of 1 • next >
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Comment: C: list of dockerized bioinformatics apps
... WUSTL Genome MuSic https://hub.docker.com/r/zayed/genomemusic/ ...
written 21 months ago by Zee20
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
... FYI there is a more recent docker available at https://github.com/readline/docker/tree/master/MuSiC , however it's outdated and it doesnt work. I made my own version of this and committed it back to dockerhub docker pull zayed/genomemusic Will get the fully installed GenomeMUSIC to try o ...
written 21 months ago by Zee20
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
... Resolved this in Ubuntu with sudo apt-get install -y r-cran-domc ...
written 21 months ago by Zee20
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Answer: A: Piping With Samtools, Bwa And Bedtools
... With Novoalign we do the equivalent   1. Create the aligned , unsorted bam file. The aligner will use all or most cores (controlled  with -c) so we don't want to exhaust resources: novoalign -d genome.novoindex -f s_1_1.fastq.gz s_1_2.fastq.gz -a -oSAM \ |  samtools view -uS - > s1.bam 2. Th ...
written 4.2 years ago by Zee20
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Answer: A: Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
... I think there is a lot of potential in this area and worth trying out different approaches. We have been trying to gain more traction with RNASeq data and Novoalign (we're the developers) and it seems there is room to combine our mapping strategy with an approach like Tophat's or SplitSeek. I will ...
written 7.7 years ago by Zee20

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