User: a.mostafa5050

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Posts by a.mostafa5050

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Prokka error message
... Hi everybody, I am trying to run Prokka but the following error message appears: Could not run command: makeblastdb -hash_index -dbtype prot -in \/cluster\/software\/prokka\/1\.13\.7\-gompi\-2019a\/db\/kingdom\/Archaea\/sprot -logfile /dev/null Here is my SLURM script: module load prokka ...
software error alignment written 1 day ago by a.mostafa50500 • updated 20 hours ago by Mensur Dlakic7.1k
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Comment: A: CD-HIT fatal error
... This is the output I got. Starting job 1557338 on c5-43 at Sat Nov 21 00:26:07 CET 2020 1) StdEnv ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jun 22 2019, 13:22:05 Command: cd-hit-est -i /cluster/work/users/ahmedbar/191129_M01132.Pr ...
written 1 day ago by a.mostafa50500
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Comment: A: CD-HIT fatal error
... I mean it starts and after doing some job, it stops and says (Fatal Error: file opening failed.. Program halted !!) ...
written 2 days ago by a.mostafa50500
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CD-HIT fatal error
... Hello everybody, when I run CD-HIT-est, after starting the work and the algorithm starts to compare sequences and do some work, it stops the following error message appears (Fatal Error: file opening failed.. Program halted !!). Here is my script: module load CD-HIT/4.8.1-foss-2018b cd-hit- ...

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