User: b.mascat

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b.mascat0
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Posts by b.mascat

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Comment: A: meta-analysis of RNA_seq public data
... That's edgeR sorry for the typo. You can introduce the batch effect as a co-variable in the experimental design in DEseq2 or correct it with limma as far as I know. ...
written 2 days ago by b.mascat0
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Answer: A: meta-analysis of RNA_seq public data
... If all your datasets were sequencing by RNA-seq you can use some R package like DEseq2 or Edje2 but you have to take care about how this rna-seq was performing (Bulk RNA, PolyA-RNA, rRNA deplection) and the technology that was used (Ion torrent, Illumina, etc). Depending of this, probably the pre-pr ...
written 2 days ago by b.mascat0
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Meta-analysis from Clinical reports in PDF
... Hello everyone, I have a total of 60 publications with cohorts of differen size (from one single case report to cohort studies). I want to ETL the informattion about the causal mutations in each patient and his corresponding phenotype. Exist any tool, package or pipeline to do this effienctly?. Rev ...
R written 2 days ago by b.mascat0 • updated 2 days ago by genomax92k

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