User: ramyak1912

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ramyak19120
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Posts by ramyak1912

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Comment: A: Very large fastq files from RNA-seq
... Hi , Thanks for your reply. I used some samples from ENCODE which were ~30GB or ~200 million reads to run some jobs on aws batch. And I got Out OfMemory Errors. And I am aligning to the human genome. I used the same pipeline before for running a basic rna-seq experiment with 25 to 30 million rea ...
written 8 weeks ago by ramyak19120
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Very large fastq files from RNA-seq
... Hi all, I am trying to optimize an RNA-seq pipeline and I want to be able to estimate the RAM requirements for fastq files of different sizes. So far I have tested on files from typical rna-seq expeirments of ~30 to 40 million reads. I want to now test on much larger data where the file is close t ...
rna-seq sequencing written 8 weeks ago by ramyak19120 • updated 8 weeks ago by weresejuriya0

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