User: Cacau

gravatar for Cacau
Cacau470
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470
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Trusted
Location:
Canada
Last seen:
1 year, 9 months ago
Joined:
6 years, 7 months ago
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Posts by Cacau

<prev • 111 results • page 1 of 12 • next >
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How to visualize a tree with ancestral state information
... Is there anybody who may be able to tell me how a tree with ancestral state information can be visualized such as the following one? My data has three states, I have calculated their probabilities for each node using bayestrait already. What software shall I use? ![enter image description here][1] ...
gene written 21 months ago by Cacau470 • updated 21 months ago by Biojl1.7k
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Comment: C: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
... That's very helpful! Thank you. ...
written 2.2 years ago by Cacau470
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Why do ribo-seq sequencing data have only a small proportion of uniquely mapped reads?
... I downloaded several published ribo-seq data and mapped them with STAR. However, only 15% ~ 50% of them are uniquely mapped reads. The reads are short, the length being about 35bp long after trimming. Is this the reason? Or might be because many rRNA reads are included? ...
ribo-seq rna-seq written 2.2 years ago by Cacau470 • updated 2.2 years ago by mark.ziemann1.2k
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Comment: C: Computing 1Gc 2GC 3GC on any CDS
... R may be a little bit slow for large-scale analysis. So I suggest not using it in case you have much data to analyze. ...
written 2.4 years ago by Cacau470
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Automatic functional annotation of protein sequences
... Is there any tool to automatically annotate eukaryotic genomes? I have protein sequences available already. ...
genome gene protein blast annotation written 2.4 years ago by Cacau470 • updated 2.4 years ago by lakhujanivijay4.7k
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Comment: C: Using FastTree to Constrian by Taxonomy
... You can write to the author of fasttree who usually replies very fast. ...
written 2.5 years ago by Cacau470
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Answer: A: Computing 1Gc 2GC 3GC on any CDS
... [condonW][1] should be able to help you. [1]: http://codonw.sourceforge.net/ ...
written 2.5 years ago by Cacau470
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Comment: C: Zero length branches on a phylogram
... You can add more taxa/sequences with potentially more divergence. The branches with 0 lengths are fine because they may reflect the fact that there is no difference between these species in the protein you analyze. ...
written 2.5 years ago by Cacau470
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Comment: C: Extract Note and symbol from gff3 file of Araport11 in Arabiopsis thaliana
... I would encourage you to ask Araport11 since it is them who establish all the datasets. ...
written 2.5 years ago by Cacau470
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Comment: C: Reverse Complement Human Genome Reference
... Yes, perhaps you can do that after mapping by scripts. ...
written 2.5 years ago by Cacau470

Latest awards to Cacau

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Popular Question 2.4 years ago, created a question with more than 1,000 views. For FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
Centurion 2.5 years ago, created 100 posts.
Voter 2.5 years ago, voted more than 100 times.
Great Question 3.0 years ago, created a question with more than 5,000 views. For Strategies To Blast Against Fastq Files
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Popular Question 3.2 years ago, created a question with more than 1,000 views. For Any Forums On Biology?
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