User: Cacau

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Cacau410
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410
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Location:
Canada
Last seen:
2 months ago
Joined:
5 years ago
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c**************@gmail.com

about me

Posts by Cacau

<prev • 111 results • page 1 of 12 • next >
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How to visualize a tree with ancestral state information
... Is there anybody who may be able to tell me how a tree with ancestral state information can be visualized such as the following one? My data has three states, I have calculated their probabilities for each node using bayestrait already. What software shall I use? ![enter image description here][1] ...
gene written 9 weeks ago by Cacau410 • updated 8 weeks ago by Biojl1.6k
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Comment: C: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
... That's very helpful! Thank you. ...
written 7 months ago by Cacau410
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Why do ribo-seq sequencing data have only a small proportion of uniquely mapped reads?
... I downloaded several published ribo-seq data and mapped them with STAR. However, only 15% ~ 50% of them are uniquely mapped reads. The reads are short, the length being about 35bp long after trimming. Is this the reason? Or might be because many rRNA reads are included? ...
ribo-seq rna-seq written 7 months ago by Cacau410 • updated 7 months ago by mark.ziemann1.1k
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Comment: C: Computing 1Gc 2GC 3GC on any CDS
... R may be a little bit slow for large-scale analysis. So I suggest not using it in case you have much data to analyze. ...
written 10 months ago by Cacau410
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Automatic functional annotation of protein sequences
... Is there any tool to automatically annotate eukaryotic genomes? I have protein sequences available already. ...
genome gene protein blast annotation written 10 months ago by Cacau410 • updated 10 months ago by Vijay Lakhujani2.5k
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Comment: C: Using FastTree to Constrian by Taxonomy
... You can write to the author of fasttree who usually replies very fast. ...
written 11 months ago by Cacau410
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Answer: A: Computing 1Gc 2GC 3GC on any CDS
... [condonW][1] should be able to help you. [1]: http://codonw.sourceforge.net/ ...
written 11 months ago by Cacau410
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Comment: C: Zero length branches on a phylogram
... You can add more taxa/sequences with potentially more divergence. The branches with 0 lengths are fine because they may reflect the fact that there is no difference between these species in the protein you analyze. ...
written 11 months ago by Cacau410
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Comment: C: Extract Note and symbol from gff3 file of Araport11 in Arabiopsis thaliana
... I would encourage you to ask Araport11 since it is them who establish all the datasets. ...
written 11 months ago by Cacau410
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Comment: C: Reverse Complement Human Genome Reference
... Yes, perhaps you can do that after mapping by scripts. ...
written 11 months ago by Cacau410

Latest awards to Cacau

Great Question 7 months ago, created a question with more than 5,000 views. For How can I change the default path to which SRA files are downloaded?
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Popular Question 10 months ago, created a question with more than 1,000 views. For FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
Centurion 11 months ago, created 100 posts.
Voter 11 months ago, voted more than 100 times.
Great Question 17 months ago, created a question with more than 5,000 views. For Strategies To Blast Against Fastq Files
Popular Question 17 months ago, created a question with more than 1,000 views. For Any Forums On Biology?
Popular Question 19 months ago, created a question with more than 1,000 views. For Any Forums On Biology?
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