User: Cacau

gravatar for Cacau
Cacau390
Reputation:
390
Status:
Trusted
Location:
Canada
Last seen:
4 weeks, 1 day ago
Joined:
4 years, 3 months ago
Email:
c**************@gmail.com

about me

Posts by Cacau

<prev • 108 results • page 1 of 11 • next >
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Comment: C: Computing 1Gc 2GC 3GC on any CDS
... R may be a little bit slow for large-scale analysis. So I suggest not using it in case you have much data to analyze. ...
written 5 weeks ago by Cacau390
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Automatic functional annotation of protein sequences
... Is there any tool to automatically annotate eukaryotic genomes? I have protein sequences available already. ...
genome gene protein blast annotation written 5 weeks ago by Cacau390 • updated 5 weeks ago by Vijay Lakhujani1.2k
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Comment: C: Using FastTree to Constrian by Taxonomy
... You can write to the author of fasttree who usually replies very fast. ...
written 10 weeks ago by Cacau390
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Answer: A: Computing 1Gc 2GC 3GC on any CDS
... [condonW][1] should be able to help you. [1]: http://codonw.sourceforge.net/ ...
written 10 weeks ago by Cacau390
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Comment: C: Zero length branches on a phylogram
... You can add more taxa/sequences with potentially more divergence. The branches with 0 lengths are fine because they may reflect the fact that there is no difference between these species in the protein you analyze. ...
written 10 weeks ago by Cacau390
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Comment: C: Extract Note and symbol from gff3 file of Araport11 in Arabiopsis thaliana
... I would encourage you to ask Araport11 since it is them who establish all the datasets. ...
written 10 weeks ago by Cacau390
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Comment: C: Reverse Complement Human Genome Reference
... Yes, perhaps you can do that after mapping by scripts. ...
written 10 weeks ago by Cacau390
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Comment: C: Zero length branches on a phylogram
... Presumably your sequences have too many identical nucleotides. Try to use data with more divergence. ...
written 10 weeks ago by Cacau390
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High FPKM values for bacterial genes
... I mapped RNA-seq reads to a bacterial genome and found most genes have a much higher expression level than eukaryotes. Is that due to the small genome size of bacteria? ...
rna-seq written 10 weeks ago by Cacau390 • updated 10 weeks ago by Chirag Parsania430
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Answer: A: RNAseq, poly(A) selection
... What species are you analyzing? May the annotation of genome be problematic? ...
written 10 weeks ago by Cacau390

Latest awards to Cacau

Centurion 10 weeks ago, created 100 posts.
Voter 10 weeks ago, voted more than 100 times.
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