User: txd866

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txd8660
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Posts by txd866

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Comment: C: How to predict cancer-related proteins in Protein-Protein Interaction networks
... Dear Jean-Karim Heriche, how to understand the result of label propagation algorithm? Thank you. This is my question. http://stackoverflow.com/questions/34701650/how-to-understand-the-result-of-label-propagation-algorithm ...
written 4.5 years ago by txd8660
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How to predict cancer-related proteins in Protein-Protein Interaction networks
... Protein-protein interaction networks are known. It is an undirected graph. Each row of the networks is like this (Protein 2 - Protein 6), and It represents the interaction between Protein 2 and Protein 6. networks: Protein 2 - Protein 6 Protein 4 - Protein 5 Protein 6 - Protein 5 Protein 5 - Prote ...
bioinformatics protein networks written 4.5 years ago by txd8660
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A question about upregulated and downregulated genes in microarray
... My teacher firmly believes that there is a gene (or a group of genes) upregulated in the case of considering all the genes from microarray, accordingly, there must be another gene (or a group of genes) which is downregulated. I find that this view is wrong after analysis by designing algorithms. Do ...
microarray written 5.6 years ago by txd8660 • updated 5.6 years ago by Devon Ryan95k
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Comment: C: How To Set A Threshold On Selecting Gene Pairs
... Thank you for your reply! ...
written 6.0 years ago by txd8660
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How To Set A Threshold On Selecting Gene Pairs
... Dear all, I want to select high correlated gene pairs by calculating correlations (including positive and negative correlations) between two genes from microarray. But I don't know how to set threshold on correlation coefficient, which threshold would be better to select high correlated gene pairs? ...
gene pair threshold written 6.0 years ago by txd8660 • updated 6.0 years ago by Ashutosh Pandey12k
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Comment: C: One Question About Command Line Interface Of Goal In Gene Set Enrichment Analysi
... Dear Giovanni M Dall'Olio,I try it again according to your suggestion, It still shows the error ...
written 7.0 years ago by txd8660
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One Question About Command Line Interface Of Goal In Gene Set Enrichment Analysis
... In order to perform the Gene Set Enrichment Analysis for many clusters of genes in batch processing,I try to use command line interface of GOAL (The GOAL is user-friendly in graphical user interface (GUI),but it also contains command line interface for batch processing. GOAL can be downloaded from w ...
gene enrichment analysis written 7.1 years ago by txd8660 • updated 6.5 years ago by Biostar ♦♦ 20

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