User: liran0921

gravatar for liran0921
liran0921110
Reputation:
110
Status:
New User
Location:
Last seen:
5 years, 1 month ago
Joined:
5 years, 11 months ago
Email:
l********@gmail.com

about me

Posts by liran0921

<prev • 40 results • page 1 of 4 • next >
0
votes
1
answer
15k
views
1
answers
Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
... Thanks for your answer. It's very helpful! ...
written 5.2 years ago by liran0921110
0
votes
1
answer
15k
views
1
answers
Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
... Thanks. I tried UCSC table, but there are only exon coordinate info in the output gtf file. So how to extract the info for intronic, UTR and intergenic region? ...
written 5.2 years ago by liran0921110
0
votes
1
answer
15k
views
1
answers
Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
... I got some novel miRNAs which don't have any annotation information. So I want to overlap them with the gene annotation in the genome. ...
written 5.2 years ago by liran0921110
28
votes
1
answer
15k
views
11 follow
1
answer
Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Information
... Hi Everyone, This might be a simple question but has been bothering me. Actually I have some small RNA which have been mapped to genome. But I want to find out their location in the genome (exon, intron, UTR, intergenic). So I would like to use a genome annotation with these information to do that. ...
genome written 5.2 years ago by liran0921110 • updated 5.2 years ago by Mitch Bekritsky1.1k
0
votes
3
answers
5.8k
views
3
answers
Answer: A: Arlequin Input Format
... I couldn't remember exactly, but there should be some example files provided by Arlequin which you can use to create you own input file. ...
written 5.2 years ago by liran0921110
0
votes
3
answers
4.6k
views
3
answers
Answer: A: Htseq-Count Not Giving Counts For Mirna Alignment To Mirbase
... I suppose your gtf file is downloaded from Mirbase. Actually the coordinates in this file is based on the alignment with bovine genome. So you should align your reads file with the same bovine genome if you want to use this gtf file for read counting. ...
written 5.2 years ago by liran0921110
0
votes
3
answers
5.3k
views
3
answers
Comment: C: Mirdeep2 Quantifier Module Output
... yes, the read count can represent expression quantity. ...
written 5.2 years ago by liran0921110
1
vote
3
answers
5.3k
views
3
answers
Comment: C: Mirdeep2 Quantifier Module Output
... Thanks for your reply. I am using the largest read count value when there are multiple mappings for a miRNA. I suppose this is not big difference as you said. ...
written 5.4 years ago by liran0921110
5
votes
3
answers
5.3k
views
8 follow
3
answers
Mirdeep2 Quantifier Module Output
... Hi everyone, I am using the mirdeep2 quantifier module the quantify the miRNA expression with the default parameters. As some miRNA can be mapped to multiple locations with different counts number, I am confused at how to determine the real counts number: eg: #miRNA read_count precurs ...
written 5.4 years ago by liran0921110 • updated 4.1 years ago by meetgirish19860
0
votes
1
answer
4.6k
views
1
answers
Comment: C: Family Classification Of Mirna
... Thanks! This is useful. ...
written 5.4 years ago by liran0921110

Latest awards to liran0921

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1890 users visited in the last hour