User: Sasha Fokin

gravatar for Sasha Fokin
Sasha Fokin80
Reputation:
80
Status:
Trusted
Location:
Russia
Website:
http://onco.io/
Twitter:
bifurcate
Last seen:
1 year, 7 months ago
Joined:
7 years, 7 months ago
Email:
b******@gmail.com

i like big data

Posts by Sasha Fokin

<prev • 13 results • page 1 of 2 • next >
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Comment: C: paired reads have different names (bwa-mem)
... @ATpoint, it's interesting, maybe I did not use the most stable version: 0.7.17-r1194-dirty ...
written 2.4 years ago by Sasha Fokin80
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Answer: A: paired reads have different names (bwa-mem)
... This is also possible when the fourth and second lines (in fastq file) has differ length. In this case, the Line1 (sequence identifier) of the fastq can be correct But the program will return the same error: > [mem_sam_pe] paired reads have different names: "@E00576:153:HK75TCCXY:2:1101:23470 ...
written 2.4 years ago by Sasha Fokin80
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Answer: A: chromosome coordinate, rs
... Hi, Ebtihal Kamal. You can use [browser tool][1] to convert your RS ids to chromosome and positions. There are two assemblies (build 150): - HG19 / GRCh37 (234,756,361 SNPs) - HG38 / GRCh38 (335,322,261 SNPs) [1]: https://onco.io/find_position_ID_by_SNP_rs_ID.php ...
written 2.4 years ago by Sasha Fokin80
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Answer: A: MicroRNA-target interactions databases
... Hi, Joe Kherery! We are collecting a similar database and creating an interactive tool for visualizing regulatory networks. But **only** for a Homo Sapiens. [ONCO.IO][1] is an integrated knowledge database and network analysis tool for exploring complex gene regulatory networks. Database content i ...
written 2.7 years ago by Sasha Fokin80
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Answer: A: Human Gene Regulatory Database
... [ONCO.IO][1] is an integrated knowledge database and network analysis tool for exploring complex gene regulatory networks. Database content is based on the **manually curated annotation** of experimentally verified molecular interactions described in the literature and includes microRNAs, lncRNAs, m ...
written 2.7 years ago by Sasha Fokin80
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Answer: A: Build regulatory network for miRNA-LncRNA
... [ONCO.IO][1] is an integrated knowledge database and network analysis tool for exploring complex gene regulatory networks. Database content is based on the manually curated annotation of experimentally verified molecular interactions described in the literature and includes **microRNAs, lncRNAs, mRN ...
written 2.9 years ago by Sasha Fokin80
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Comment: C: miRNA Network construction and analysis
... If you looking for chronic myeloid leukemia, i open simple network for this disease: http://mirob.interactome.ru/_____gene_network_TefzK8tA (but in our database only about 30 validated TF-miRNA-TF interactions associated with CML) ...
written 6.4 years ago by Sasha Fokin80
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Answer: A: miRNA Network construction and analysis
... We are now building a database and online dataviz tool on cytoscape web -- MirOB (MicroRNA OncoBase). Database includes validated microRNAs and Transcription Factors Targets associated with human cancers. Currently, MirOB supports only homo sapiens organism. Network shows all interactions containi ...
written 6.4 years ago by Sasha Fokin80
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Comment: C: Identifying Tf Of Co-Expressed Genes
... You can try this tools: http://mirtarbase.mbc.nctu.edu.tw/ http://mirob.interactome.ru/pathway_navigator ...
written 7.3 years ago by Sasha Fokin80
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Answer: A: Reconstruction Hierarchical Model Of Transcription Factor From Mirna Microarray
... Hi, Azim! What do you mean by "hierarchical model of transcription factor"? That is, network of interactions? If so, then: we are now building a database and online dataviz tool on cytoscape web -- MirOB (MicroRNA OncoBase). Database includes validated microRNAs and Transcription Factors Targets ...
written 7.4 years ago by Sasha Fokin80

Latest awards to Sasha Fokin

Supporter 2.8 years ago, voted at least 25 times.
Scholar 6.4 years ago, created an answer that has been accepted. For A: miRNA Network construction and analysis

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