User: greentailedmouse
greentailedmouse • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Last seen:
- 1 year, 1 month ago
- Joined:
- 4 years, 11 months ago
- Email:
- l***********@gmail.com
about me
Posts by greentailedmouse
<prev
• 7 results •
page 1 of 1 •
next >
0
votes
1
answer
833
views
1
answers
... No, I gave up on it. Sorry! ...
written 14 months ago by
greentailedmouse • 40
3
votes
1
answer
833
views
7 follow
1
answer
... Hi all,
here is some background to my question in the title: I have two genome versions, a scaffolded and unscaffolded one; as luck has it, the annotated version is the unscaffolded one. I would like to update the coordinates in the GFF file to the scaffolded version. I wanted to use crossMap (http ...
written 19 months ago by
greentailedmouse • 40
• updated
7 months ago by
Malcolm.Cook • 800
0
votes
1
answer
795
views
1
answers
... I'll mark your answer as accepted since I've done something similar in the end; but it also answers my original question - namely, there is no such function or parameter in Granges. Thanks! ...
written 20 months ago by
greentailedmouse • 40
3
votes
1
answer
795
views
1
answer
... Hi all,
I would like to get the upstream and downstream intergenic distance between two genes in R (taking into account that some genes may overlap). For example - in the following case I would expect to get a the upstream distance of 5 for gene A, a distance 0 or negative for downstream of A, and ...
written 20 months ago by
greentailedmouse • 40
• updated
20 months ago by
ddiez • 1.7k
0
votes
0
answers
1.0k
views
0
answers
... Hi all,
I have a question about what I first thought would be a trivial task. I would like to resolve the haplotypes of a non-model (diploid) species. I have a genome assembly, and a bam file where the reads (that were used for genome assembly) are mapped. The genotype of the mapped reads is thus t ...
written 21 months ago by
greentailedmouse • 40
1
vote
1
answer
1.7k
views
1
answers
... Thanks! In the end I did write my own script; I would prefer to use the perl package for the sake of code consistency.
...
written 4.3 years ago by
greentailedmouse • 40
1
vote
1
answer
1.7k
views
1
answer
... I'm using Bio::SearchIO to parse HMMER3 output.
I am able get the significance of each sequence (which is located in the table on top of the output) with $hit->significance. I can also get the c-Evalue by using $hsp->significance. However, the more informative number would be the i-Evalue (fr ...
written 4.3 years ago by
greentailedmouse • 40
• updated
23 months ago by
Biostar ♦♦ 20
Latest awards to greentailedmouse
Popular Question
19 months ago,
created a question with more than 1,000 views.
For Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2061 users visited in the last hour