User: stolarek.ir

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stolarek.ir550
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550
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Location:
Poland
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3 months, 3 weeks ago
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5 years, 3 months ago
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Posts by stolarek.ir

<prev • 118 results • page 1 of 12 • next >
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Comment: C: Merging files in plink
... you can filter by the genotyping rate with the --geno flag ...
written 7 months ago by stolarek.ir550
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Answer: A: ABBA-BABA D statistics to pattern introgressed loci: applicable to RNA-seq data?
... vast majority of such variants likely originated in the genome, so I would say, no problem, but there is nothing inherent to transcriptome here ...
written 7 months ago by stolarek.ir550
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Answer: A: STAR analysis and alignment
... there is option --sparse which reduces the RAM needs to 16 GB for human genome ...
written 8 months ago by stolarek.ir550
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Comment: C: Illumina paired end read header difference- SPAdes bwa run ERROR
... download bbmap and use repair.sh from it like so: ./repair.sh in1=pair1.fastq in2=pair2.fastq out1=out_pair1.fastq out2=out_pair2.fastq outsingle=out_single.fastq ...
written 13 months ago by stolarek.ir550
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Comment: C: RNASeq lane effect
... there might be something off if you multiplex hardly, and the indexes used within the lane do not co-op with each other well ...
written 13 months ago by stolarek.ir550
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Comment: C: long reads Pacbio SNP calling
... either look at their webpage if they have anything dedicated for that, or use GATK ...
written 13 months ago by stolarek.ir550
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Answer: A: long reads Pacbio SNP calling
... no worries, with high coverage you can do a decent SNP calling using PacBio ...
written 13 months ago by stolarek.ir550
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codeml, output tree topology different from the input tree
... Dear all, I am struggling with understanding the output of the codeml. I used typical M0 model with settings like so: runmode = 0 seqtype = 1 CodonFreq = 2 clock = 0 model = 0 NSsites = 0 The provided tree (runmode = 0) is however severely altered in the o ...
paml codeml written 13 months ago by stolarek.ir550
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Comment: C: Paired vs unpaired (DNA Sequencing)
... cmon, at least use google and read about anything on the first page ...
written 14 months ago by stolarek.ir550
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Comment: C: How to align multiple genomic regions simultaneously
... I don't really get it. Is the problem that aligner takes one read and maps it? This is how it's done, alignment of each read is independent from other reads ...
written 14 months ago by stolarek.ir550

Latest awards to stolarek.ir

Popular Question 4 months ago, created a question with more than 1,000 views. For plink 1.9 PED to VCF, SNPs differ on input and output files
Scholar 10 months ago, created an answer that has been accepted. For A: PLINK RECODING ISSUE
Great Question 11 months ago, created a question with more than 5,000 views. For Python Cigar String - Finding Indels Break Points Positions
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Genotype Likelihoods
Popular Question 15 months ago, created a question with more than 1,000 views. For plink 1.9 PED to VCF, SNPs differ on input and output files
Popular Question 18 months ago, created a question with more than 1,000 views. For Extract Regions Of Genome That Have 0 Coverage
Centurion 18 months ago, created 100 posts.
Popular Question 18 months ago, created a question with more than 1,000 views. For Extract Regions Of Genome That Have 0 Coverage
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Genotype Likelihoods
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Extract Regions Of Genome That Have 0 Coverage
Commentator 2.5 years ago, created a comment with at least 3 up-votes. For C: Split Reads vs Supplementary Reads
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Python Cigar String - Finding Indels Break Points Positions
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Extract Regions Of Genome That Have 0 Coverage
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Extract Regions Of Genome That Have 0 Coverage
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Python Cigar String - Finding Indels Break Points Positions
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Python - Scan Thorugh A Large File And Report Matches In Vcf File Under Conditions

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