User: bigmawen

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bigmawen240
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Posts by bigmawen

<prev • 31 results • page 1 of 4 • next >
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Job: Postdoc and PhD student with statistics/analytics training at UNC Charlotte, NC, USA
... UNC Charlotte Dept. of Bioinformatics is seeking new members as postdoc researchers and PhD students. The incumbent will work on big data integration and analysis, methodology development, and contribute to a range of challenging and important research projects in biomedicine. We integrate and ...
omics statistics job R bioinformatics big data written 8 weeks ago by bigmawen240
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News: Pathview Web server down 2/12-2/13 (EST)
... Our computing infrastructure is scheduled for maintenance in the coming week in Monday 2/12 and Tuesday 2/13 (EST). Pathview Web server (https://pathview.uncc.edu) is likely inaccessible at that time. Please make sure to submit your analyses before or after that time window, and keep other users aro ...
pathview web news visualization pathview written 4 months ago by bigmawen240
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Answer: A: What's Pathway Enrichment Analysis?
... As Andrew said, Pathway analysis + data visualization can be done in R/Bioconductor using gage and pathview package. The full workflow is described in their package vignettes: for RNA-Seq data http://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/RNA-seqWorkflow.pdf for microar ...
written 12 months ago by bigmawen240
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Answer: A: Is There A Free Alternative To Ingenuity Pathway Analysis?
... Pathview Web server provides a user friendly comprehensive solution for pathway analysis, data integration and visualization. It was recently published in Nucleic Acids Research (NAR) Web Server issue: https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx372 Pathview Web server exten ...
written 13 months ago by bigmawen240
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Answer: A: Error: Pathway analysis using Sleuth results
... pathway graphs without data mapped is because that no gene (or compound) IDs can be mapped to the pathways. This is most likely because that gene.idtype (or cpd.idtype) is the not set correctly or gene.data (cpd.data) is not in the right format. The error messages are consistent with this. Please ch ...
written 13 months ago by bigmawen240
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Answer: A: GAGE or GSEABase using expression data and pathway.gmt file for mouse
... Gage package has a tutorial on data preparation, which describes how to read and prepare gene set data in gmt format: http://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/dataPrep.pdf GAGE is a gene set/pathway analysis method, which can be applied to RNA-seq data independent of sp ...
written 13 months ago by bigmawen240
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Tool: Pathview Web server published in NAR
... The Pathview Web server was recently published in Nucleic Acids Research (NAR) Web Server issue: https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx372 Pathview is an R/Bioconductor package for pathway based data integration and visualization. It maps and renders a wide variety of biolo ...
omics visualization pathway analysis rna-seq tool written 13 months ago by bigmawen240
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Answer: A: ERROR when I run Pathview()
... Since it worked ealier on another machine, I don’t think the code has any problem. It is likely that your new machine has an outdated R/Bioconductor or problematic installation. Update to the latest version or reinstallation would work. You may also use the pathview web server: http://pathview.u ...
written 15 months ago by bigmawen240
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Job: Research Scientist in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA (updated)
... UNC Charlotte Dept. of Bioinformatics is seeking a full time research scientist in Biostatistics/Bioinformatics. The incumbent will develop statistical/computational methods/tools for high throughput omics (genome, transcriptome, proteome, metabolome etc) data integration, analysis and visualization ...
R genetics/genomics job statistics written 19 months ago by bigmawen240
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Job: Full Time Bioinformatics Software Developer at UNC Charlotte, NC, USA (updated)
... UNC Charlotte Dept. of Bioinformatics is seeking a full time Software Developer (research associate). The incumbent will lead the development of bioinformatics web servers, resources and applications. He/she will also work on big data integration and analysis. One focus is the Pathview project. Path ...
R mysql php javascript job written 19 months ago by bigmawen240

Latest awards to bigmawen

Scholar 21 months ago, created an answer that has been accepted. For A: GAGE - eg2sym (ID conversion)
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: GAGE - eg2sym (ID conversion)

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