User: robjohn7000

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robjohn700090
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Posts by robjohn7000

<prev • 81 results • page 1 of 9 • next >
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Comment: C: Wrapping protein sequence output using python
... John and and Wocka, thanks for your help and time. ...
written 4.4 years ago by robjohn700090
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Comment: C: Wrapping protein sequence output using python
... Great! Exactly what I wanted. It did the job. Many thanks to you James. ...
written 4.4 years ago by robjohn700090
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Wrapping protein sequence output using python
... Hi, Can someone please show me how to output protein sequence wrapped at 70 characters per line using the following code:   for record in SeqIO.parse(filename, "genbank"):     for feature in record.features:         if feature.type == "CDS":             locus_tag = feature.qualifiers.get("locus_t ...
gene python sequence biopython written 4.4 years ago by robjohn700090 • updated 4.4 years ago by James Ashmore2.8k
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Multiple whole genome alignment
... Hi, Does anyone know of any whole genome alignment tool that can handle 200-300 bacteria genome? Thanks ...
sequencing assembly alignment bioinformatics written 4.7 years ago by robjohn700090 • updated 4.6 years ago by Chrispin Chaguza250
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Comment: C: changing heatmap color using heatmap.3
... Thanks @arnstrm. Unfortunately, that still didn't work. ...
written 4.8 years ago by robjohn700090
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changing heatmap color using heatmap.3
... Hi, Does anyone know how to change the heatmap color in heatmap.3 I want to change "color.FUN = gplots::bluered" to something different. So far I have tried  heat.colors(3) and col = colorRampPalette(c("lightyellow", "red") without any success. Any guesses? ...
R heatmap written 4.8 years ago by robjohn700090 • updated 4.8 years ago by arnstrm1.7k
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Comment: C: assigning function to putative/hypothetical proteins
... Many thanks for your suggestions Prakki ...
written 5.8 years ago by robjohn700090 • updated 7 weeks ago by RamRS25k
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assigning function to putative/hypothetical proteins
... Hi All, What is the best and current bioinformatics approach to assign functions to putative/hypothetical proteins? Thanks ...
sequence alignment blast rna-seq written 5.8 years ago by robjohn700090 • updated 5.8 years ago by Prakki Rama2.4k
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Gene official symbols and uncharacterised genes in the Salmonella annotations
... Hi, I have a confusing issue with the folloing genes and their annotations: SL0010 conserved hypothetical protein SL0430 hypothetical major facilitator family transport protein SL0471 integral membrane protein AefA SL0501 putative membrane protein The following genes have "hypothetical.....", "co ...
gene genome written 5.8 years ago by robjohn700090 • updated 19 months ago by predeus1.3k
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Comment: C: Creating Biomodels-Compliant Sbml Model
... Thanks a lot for your suggestions Arman. ...
written 6.0 years ago by robjohn700090

Latest awards to robjohn7000

Popular Question 2.2 years ago, created a question with more than 1,000 views. For Multiple whole genome alignment
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Multiple whole genome alignment
Popular Question 3.2 years ago, created a question with more than 1,000 views. For changing heatmap color using heatmap.3
Popular Question 3.2 years ago, created a question with more than 1,000 views. For assigning function to putative/hypothetical proteins
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Salmonella Annotation For Rna-Seq Analysis
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Creating Biomodels-Compliant Sbml Model
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Concatenating Bacteria Genome Contigs
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Salmonella Annotation For Rna-Seq Analysis
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Bed Format Version Of Genbank File
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Removing Duplicate Rows(Gene Names)
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Parsing A Multi-Record Genbank File
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Extracting Gene Names From Venn Diagram
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Multiple Correlations Or Anova
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Multiple whole genome alignment
Popular Question 4.4 years ago, created a question with more than 1,000 views. For changing heatmap color using heatmap.3
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Getting Annotation Data From A Gff File
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Plotting A Multicolumn Data
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Finding Maximum Row Element Across 3 Columns
Supporter 4.4 years ago, voted at least 25 times.
Epic Question 4.7 years ago, created a question with more than 10,000 views. For Finding The Mean Of Values In A Single Column
Great Question 5.7 years ago, created a question with more than 5,000 views. For Finding The Mean Of Values In A Single Column
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Removing Duplicate Rows(Gene Names)
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Extracting Gene Names From Venn Diagram
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Plotting A Multicolumn Data
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Using Genomicranges

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