User: Marc Perry

gravatar for Marc Perry
Marc Perry50
Reputation:
50
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Trusted
Location:
Canada/Toronto/Ontario Institute for Cancer Research
Twitter:
mdperry
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Google Scholar Page
Last seen:
2 years, 3 months ago
Joined:
8 years, 6 months ago
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m************@gmail.com

Posts by Marc Perry

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Structural Variant Visualisation from VCF source.
... Hi Tunc, You may have figured out that I am no longer working at the ICGC DCC #sadface. Are you still posting questions to their dcc-support Help desk? Anybody answering you? I have never used the circos plotting software but it looks cool. If you have other questions that I might be able to answ ...
written 2.7 years ago by Marc Perry50
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Answer: A: loop over lines group by group and do something separately in text file
... One solution is to build a data structure as you iterate over the incoming lines of data. Then, after you finish reading the file you iterate over the data structure and perform the processing action on the stored lines. You mention the file is large. This approach may fail if the data structure us ...
written 4.5 years ago by Marc Perry50
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Answer: A: LWP error (Bioperl on ubuntu)
... I would've thought that the LWP module is part of the standard Perl distribution, and I thought that all of the HTTP::Request modules were bundled into LWP, so I agree with Chris: perl -MCPAN -e 'install IO::String' (or possibly sudo perl -MCPAN -e 'install IO::String') would be the next thing to t ...
written 4.9 years ago by Marc Perry50
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Answer: A: Short Read Aligners/ Snp Calling Comparison
... Did you already check out this review from last year? Nat Methods. 2009 Nov;6(11 Suppl):S6-S12. Sense from sequence reads: methods for alignment and assembly. by Flicek P, Birney E. ...
written 8.6 years ago by Marc Perry50

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Teacher 7.2 years ago, created an answer with at least 3 up-votes. For A: Short Read Aligners/ Snp Calling Comparison

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