User: RoyC

gravatar for RoyC
RoyC140
Reputation:
140
Status:
New User
Location:
Penn State University
Website:
I do not currently hav...
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Google Scholar Page
Last seen:
5 years, 8 months ago
Joined:
6 years, 4 months ago
Email:
r********@yahoo.com

I am a student at Penn State University - University Park

Posts by RoyC

<prev • 10 results • page 1 of 1 • next >
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Cnv Data
... Does anyone know where I can download copy number data (amplification/deletion) along with the Patient IDs? I have tried using http://gdac.broadinstitute.org/runs/ but the CNV data I downloaded there does not have the TCGA IDs along with the amplification/deletion I am trying to get all CNV data ...
copynumber tcga cnv written 5.7 years ago by RoyC140 • updated 2.2 years ago by smrutimayipanda10
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How To Get Gistic Or Rae Copy Number Variance Data Files For Copy Number Variance From Either Tcga Or Cbioportal?
... Does anyone have any idea how can get GISTIC or RAE data files for copy number variance from either TCGA or CBioPortal? I want to use the data for MeMo runs; however, I can't seem to find the CNV data that match up with the format required for MeMo. Any help would be massively appreciated! Thank you ...
tcga cnv written 5.8 years ago by RoyC140 • updated 5.8 years ago by B. Arman Aksoy1.2k
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Cbioportal/Tcga Cnv Data
... Does anyone know where to download gistic_amp_file or gistic_del_file as well as the case_file from CBioPortal or TCGA? Thank you! ...
copynumber tcga cnv written 6.0 years ago by RoyC140 • updated 20 months ago by Biostar ♦♦ 20
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Is It Possible To Get The Patient Ids For The Survival Data Shown On Cbioportal?
... Does anyone know if it's possible to get the patient IDs for the survival data shown on CBioPortal? I have tried contacting them; however, I have not received a response yet. Thank you! ...
data database cancer written 6.3 years ago by RoyC140 • updated 6.3 years ago by Istvan Albert ♦♦ 81k
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Is There A Way To Do Bulk Data Download From The Cbioportal?
... Is there anyway to download the mutation data for a gene on CBioPortal at once? I mean as opposed to selecting each tissue type one by one and copying the mutation data from there. Thank you! ...
gene mutation written 6.4 years ago by RoyC140 • updated 6.4 years ago by B. Arman Aksoy1.2k
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Comment: C: Are There Any Comparable Programs To Genome Music That People Could Recommend
... Hi, thank you for your response! I was wondering if it was possible to generate a lollipop map with MuSiC? ...
written 6.4 years ago by RoyC140
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Are There Any Comparable Programs To Genome Music That People Could Recommend
... Are there any comparable programs to Genome MuSiC (Mutational Significance in Cancer) that people could recommend? My issue with MuSiC is that it will not run on Ubuntu 13.04 ...
genome ubuntu mutation music written 6.4 years ago by RoyC140 • updated 5.9 years ago by Malachi Griffith18k
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Comment: C: Genome Music Modeling Tool
... The three genomes was just an example. We have many samples and want to run 500 genomes, but only want to compare one genome to the rest of the 499. Thank you! ...
written 6.4 years ago by RoyC140
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Genome Music Modeling Tool
... Does anyone know if I can compare a single genome against a list of other genomes with this program and how would I do it? Currently I can only get it to do an analysis of every combination of genomes in a given group. For example, given genome A, B, and C, I only want to compare A to B and C separa ...
genome modeling mutation written 6.4 years ago by RoyC140 • updated 6.4 years ago by Chris Miller21k
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How To Generate A "Lollipop" Image To Display Mutations Along A Sequence
... How could I generate a similar visual with the "lollipop" given my own data. Is there any software available out there? On the cBioPortal : ( http://www.cbioportal.org/public-portal/index.do?cancer_study_id=luad_tcga&genetic_profile_ids=luad_tcga_gistic&genetic_profile_ids=luad_tcga_mutat ...
genome mutation cancer written 6.4 years ago by RoyC140 • updated 9 months ago by Vitis2.3k

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