User: jasper1918

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jasper191810
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United States
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2 years, 4 months ago
Joined:
6 years, 7 months ago
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Posts by jasper1918

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Comment: C: Tool to separate human and mouse rna seq reads
... This link too is now dead. Anyone have a new source? ...
written 3.7 years ago by jasper191810
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Answer: A: COmparing two SNV vcf files using bedtools
... Please be aware that bedtools does not verify that the allele is common between both samples when doing intersection. It is looking only at positions. This will inflate your concordance. Rather, I would use [bcftools isec][1] [1]: https://samtools.github.io/bcftools/bcftools.html#isec ...
written 3.7 years ago by jasper191810
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Answer: A: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
... Hi,I just came across this and while it has been awhile Im sure there are many struggling to figure this out. The F-Seq program does in fact do significance testing. Instead of outputing as bed, set to npf (narrowpeak format). It has the traditional 6+3 bed format with pvalues. ...
written 6.6 years ago by jasper191810

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