User: townsendae
townsendae • 0
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Posts by townsendae
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... I am running the R cellassign algorithm on a set of 9 samples. Each sample consists of cells extracted from lungs. When I look at a UMAP plot and color by sample origin, there is a notable batch effect. So, here's my question..
Can I run the cellassign algorithm on each sample independently for cel ...
written 15 days ago by
townsendae • 0
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... So you're saying above that the original counts should be used for DE testing and the batch corrected should be used for visualization/clustering. ...
written 21 days ago by
townsendae • 0
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... One is a dataset of lung samples from a sample of healthy patients and then the other is lung samples from patients with a condition (completely separate experiments). I believe they both used drop-seq technology. The batch effect was quite pronounced between the different samples in the healthy pat ...
written 21 days ago by
townsendae • 0
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... Sorry! Should have specified... it is single cell ...
written 21 days ago by
townsendae • 0
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... Hi there, I am new to this website and was hoping someone could answer some questions for me. I have two datasets. One is a control dataset and the other is a dataset where patients have a condition. Both are taken from human lungs, however, they are two entirely separate experiments. I have applied ...
written 21 days ago by
townsendae • 0
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