User: maria.faleeva
maria.faleeva • 0
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Posts by maria.faleeva
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... and I can run this line of code whilst the initial code is running? ...
written 14 days ago by
maria.faleeva • 0
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... I am currently trying to run
STAR --runThreadN 4 --genomeDir genome_index --readFilesCommand gunzip -c --readFilesIn /Users/mfaleeva/Desktop/Day30/Day-30-R1_S1_L008_R1_001.fastq.gz /Users/mfaleeva/Desktop/Day30/Day-30-R1_S1_L008_R2_001.fastq.gz --outSAMattrRGline ID:Day30_R1
For some reason, ...
written 14 days ago by
maria.faleeva • 0
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... Hi there, I am mapping my FASTQ files using STAR, but it is taking a rather long time. In order to check if everything is ok I want to look at my log.progress.out files, but the file that I currently have in the directory doesnt have a format/does not let me open it. Does anybody know how to check t ...
written 14 days ago by
maria.faleeva • 0
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... I already have indexed Homo_sapiens.GRCh38.dna.primary_assembly.fa, when you mean not enough RAM as in, it shall never work, or it shall take a very very long time to work? ...
written 15 days ago by
maria.faleeva • 0
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... Hey guys, any clue on how long it should take to map two fastq files using STAR?
I think the two fastq files combined are around 6bg, and my computer is running on 16gb ram. I put the thread number as 4.
Havnt been able to find any insight elsewhere, so was wondering whether anyone had any experi ...
written 15 days ago by
maria.faleeva • 0
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... Sorry for stupid question, but if the STAR command didnt run because of the error, why would the files be there anyway? ...
written 15 days ago by
maria.faleeva • 0
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... (base) Marias-MBP:genome_index mfaleeva$ ls -l
total 8
-rw-r--r-- 1 mfaleeva staff 0 11 Jan 19:16 Aligned.out.sam
-rw-r--r-- 1 mfaleeva staff 2612 11 Jan 19:16 Log.out
-rw-r--r-- 1 mfaleeva staff 0 11 Jan 19:16 Log.progress.out
drwx------ 5 mfaleeva staff ...
written 15 days ago by
maria.faleeva • 0
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