Moderator: Andrew Su

gravatar for Andrew Su
Andrew Su4.8k
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Location:
San Diego, CA
Website:
http://sulab.org/
Twitter:
andrewsu
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Last seen:
5 months, 2 weeks ago
Joined:
8 years, 6 months ago
Email:
a********@gmail.com

I am a Professor at the Scripps Research Institute. My lab is equally focused on biomedical discovery and bioinformatics tool development.

I feel like I am always looking for good postdocs and programmers, so if you're interested in open data, crowdsourcing, and/or informatically-driven biomedical discovery, please get in touch!

Posts by Andrew Su

<prev • 219 results • page 1 of 22 • next >
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Comment: C: Postdoctoral researcher in Bioinformatics / Open Data / Wikidata
... I have purposely left my email out of the post to reduce spam applications (ie people who simply apply for every open position). My contact info is not hard to find... ;) ...
written 6 months ago by Andrew Su4.8k
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Job: Postdoctoral researcher in Bioinformatics / Open Data / Wikidata
... The Su Lab is looking for a postdoctoral researcher to join the "Gene Wiki" team, the goal of which is to use crowdsourcing to organize biomedical knowledge. While this project previously revolved around free-text, gene-specific reviews in Wikipedia, it now centers around integrating structured dat ...
open data job wikidata written 6 months ago by Andrew Su4.8k
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retrieving transmembrane annotations from uniprot SPARQL
... From the [UniProt page for Traf3ip3][1], I can see that this protein is single-pass type IV membrane protein with a note that this annotation was "manual assertion inferred by curator". (The API actually also reports the specific evidence code ECO:0000305.) Can I get this information from the [UniP ...
uniprot sparql written 11 months ago by Andrew Su4.8k
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Comment: C: MyVariant.info fields descriptions?
... Nolwenn: apologies, embarrassingly I just saw your reply. Since you first posted we have drastically improved our documentation (http://docs.myvariant.info). And if anyone else has problems with the help email I posted above, feel free to contact me directly! (My email should be very google-able... ...
written 13 months ago by Andrew Su4.8k
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Forum: Vote David Lipman for People's Choice - 2017 Service to America Medals
... David Lipman and the GenBank team have been nominated for a [Samuel J. Heyman Service to America Medal][1], that highlights excellence in our federal workforce. He/they are also in the running for the [People's Choice Award][2]. Lipman arguably deserves a Nobel for BLAST, but we can't vote on tha ...
award blast forum genbank written 13 months ago by Andrew Su4.8k
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Comment: C: MyVariant.info fields descriptions?
... Or even better, help@myvariant.info! (Thanks Pierre...) ...
written 2.3 years ago by Andrew Su4.8k
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Answer: A: DAVID pathway analysis
... I hate to be snarky, but if DAVID is down then that's good for everyone.  DAVID hasn't updated their Gene Ontology annotations in over five years: https://twitter.com/andrewsu/status/593084814472794113 Lots of gene annotations have been added (and some deleted) in those years.  Despite many pleas ...
written 3.1 years ago by Andrew Su4.8k
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News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
... The Mozilla Foundation is accepting Fellowship Applications in open science and open data for the life sciences.  Looks to be a fantastic opportunity, and might be of interest to people here on Biostars.  More info at https://www.mozillascience.org/fellows. ...
open data news open science written 3.1 years ago by Andrew Su4.8k
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Comment: C: MyGene.info clients: mygene.R and mygene.py
... Can you provide more details on what you're trying to accomplish?  I'm not sure I understand "define the pathway for specific genes".. ...
written 3.2 years ago by Andrew Su4.8k
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Job: Web/software developer(s) interested in open source, open science and citizen science
... My bioinformatics lab is currently recruiting for one or more developer positions.  We have a particular emphasis on open source, open science and citizen science.  For more information, please see this blog post! http://sulab.org/2015/04/open-source-open-science-citizen-science-join-us/ ...
open source job citizen science open science written 3.4 years ago by Andrew Su4.8k

Latest awards to Andrew Su

Appreciated 11 months ago, created a post with more than 5 votes. For A: Computational Biology Career Prospects
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Popular Question 2.1 years ago, created a question with more than 1,000 views. For Mapping The Specificity Of Gpcrs To G-Proteins
Great Question 2.1 years ago, created a question with more than 5,000 views. For How To Link To Freebase Gene Pages Using A Gene/Protein Identifier?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Validity Of Gene List Comparisons For Lists Originating From Different Platforms
Great Question 2.1 years ago, created a question with more than 5,000 views. For Web Tool That Converts A Pubmed Query Into A Wordle Of The Abstracts
Great Question 2.1 years ago, created a question with more than 5,000 views. For Full Text Retrieval From Pubmedcentral
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Publication Text Mining
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Appreciated 3.1 years ago, created a post with more than 5 votes. For A: Computational Biology Career Prospects
Good Answer 3.1 years ago, created an answer that was upvoted at least 5 times. For A: Computational Biology Career Prospects
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Good Answer 3.6 years ago, created an answer that was upvoted at least 5 times. For A: Computational Biology Career Prospects
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Popular Question 3.8 years ago, created a question with more than 1,000 views. For How To Find All Gwas Studies That A Given Gene Has Been Implicated In?

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