Moderator: Andrew Su

gravatar for Andrew Su
Andrew Su4.7k
Reputation:
4,660
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Location:
San Diego, CA
Website:
http://sulab.org
Last seen:
3 months, 2 weeks ago
Joined:
7 years, 4 months ago
Email:
a********@gmail.com

I am an Associate Professor at the Scripps Research Institute. My lab is equally focused on biomedical discovery and bioinformatics tool development.

Posts by Andrew Su

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Comment: C: MyVariant.info fields descriptions?
... Or even better, help@myvariant.info! (Thanks Pierre...) ...
written 14 months ago by Andrew Su4.7k
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Answer: A: DAVID pathway analysis
... I hate to be snarky, but if DAVID is down then that's good for everyone.  DAVID hasn't updated their Gene Ontology annotations in over five years: https://twitter.com/andrewsu/status/593084814472794113 Lots of gene annotations have been added (and some deleted) in those years.  Despite many pleas ...
written 23 months ago by Andrew Su4.7k
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News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
... The Mozilla Foundation is accepting Fellowship Applications in open science and open data for the life sciences.  Looks to be a fantastic opportunity, and might be of interest to people here on Biostars.  More info at https://www.mozillascience.org/fellows. ...
open data news open science written 23 months ago by Andrew Su4.7k
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Comment: C: MyGene.info clients: mygene.R and mygene.py
... Can you provide more details on what you're trying to accomplish?  I'm not sure I understand "define the pathway for specific genes".. ...
written 2.1 years ago by Andrew Su4.7k
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Job: Web/software developer(s) interested in open source, open science and citizen science
... My bioinformatics lab is currently recruiting for one or more developer positions.  We have a particular emphasis on open source, open science and citizen science.  For more information, please see this blog post! http://sulab.org/2015/04/open-source-open-science-citizen-science-join-us/ ...
open source job citizen science open science written 2.3 years ago by Andrew Su4.7k
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Job: Bioinformatics Programmer / Web Developer, Su Lab, Scripps Research Institute, San Diego, CA, USA
... The Su Lab (http://sulab.org) is a bioinformatics research group that is equally interested in building computational infrastructure and in pursuing biomedical discoveries. We operate at the interface between biology, computer science, statistics, and software engineering. Our projects span ...
big-data crowdsourcing citizen-science job written 2.8 years ago by Andrew Su4.7k • updated 2.8 years ago by Istvan Albert ♦♦ 73k
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Answer: A: What to look for in a potential postdoc?
... As someone who both advises students on postdoc opportunities and evaluates prospective postdoc applicants, I have four bits of advice for you: Find candidate labs that can support you in your career goals.  Decide what it is that you want to do after your postdoc (in as much detail as you can), ...
written 3.1 years ago by Andrew Su4.7k
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Job: Multiple Postdoctoral Associate Positions -- Su Lab, Scripps, San Diego, Ca
... I have 2-3 positions open in my group now to work on projects in any and all of the following areas (and especially at the interfaces): bioinformatics, genomics, crowdsourcing, pathway analysis, semantic web, N-of-1 clinical genomics, and text mining. If any of those keywords interests you, please g ...
bioinformatics genetics job written 3.5 years ago by Andrew Su4.7k
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Answer: A: Programatic Technique For Gene-Name/Id Conversion
... Check out the python library for mygene.info. For example: In [1]: import mygene In [2]: mg = mygene.MyGeneInfo() In [3]: mg.getgene(1017) Out[3]: {'_id': '1017', 'entrezgene': 1017, 'name': 'cyclin-dependent kinase 2', 'symbol': 'CDK2', 'taxid': 9606} In [4]: mg.query('cdk2', size=2) Out[ ...
written 3.7 years ago by Andrew Su4.7k
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Answer: A: Any Examples Of Mturk/Crowdsourcing Projects In Bioinformatics?
... I thought a new answer to this old question might be valuable. In this review article on Crowdsourcing for Bioinformatics, we described several papers that used MTurk for text annotation. Including: Preliminary Experience with Amazon’s Mechanical Turk for Annotating Medical Named Entities Valid ...
written 4.1 years ago by Andrew Su4.7k

Latest awards to Andrew Su

Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Publication Text Mining
Great Question 11 months ago, created a question with more than 5,000 views. For How To Link To Freebase Gene Pages Using A Gene/Protein Identifier?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Great Question 11 months ago, created a question with more than 5,000 views. For Full Text Retrieval From Pubmedcentral
Popular Question 11 months ago, created a question with more than 1,000 views. For Web Tool That Converts A Pubmed Query Into A Wordle Of The Abstracts
Popular Question 11 months ago, created a question with more than 1,000 views. For Mapping The Specificity Of Gpcrs To G-Proteins
Popular Question 11 months ago, created a question with more than 1,000 views. For Microbiome/Metagenome Analysis Workflows
Popular Question 11 months ago, created a question with more than 1,000 views. For Clustering With Point-Wise Error Estimates
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Validity Of Gene List Comparisons For Lists Originating From Different Platforms
Great Question 11 months ago, created a question with more than 5,000 views. For Web Tool That Converts A Pubmed Query Into A Wordle Of The Abstracts
Popular Question 21 months ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Popular Question 23 months ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Appreciated 23 months ago, created a post with more than 5 votes. For A: Computational Biology Career Prospects
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: Computational Biology Career Prospects
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Good Answer 2.4 years ago, created an answer that was upvoted at least 5 times. For A: Computational Biology Career Prospects
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Popular Question 2.7 years ago, created a question with more than 1,000 views. For How To Find All Gwas Studies That A Given Gene Has Been Implicated In?
Great Question 2.7 years ago, created a question with more than 5,000 views. For How To Link To Freebase Gene Pages Using A Gene/Protein Identifier?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Online Resources For Mouse Research
Popular Question 3.0 years ago, created a question with more than 1,000 views. For How To Find All Gwas Studies That A Given Gene Has Been Implicated In?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Full Text Retrieval From Pubmedcentral

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