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Posts by emmzarrr
Comment: C: OMA-standalone and sequence gaps
... Hi Adrian, Thanks for your reply. I was confused by this because I checked my sequences for any characters which were not A,T,C,G or N and did not find any. I did try a dos2unix in case, but this didn't make any difference. And I've definitely set "InputDataType := 'DNA';" in the parameters file. ...
... Hi, I'm using OMA-standalone on my own data as well as data downloaded from NCBI. I'm working with CDS nucleotide/DNA files. However, these CDS files have some gaps in represented as Ns. I believe this is when annotations are crossing contig boundaries or gaps in the genome assembly. When running ...
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