User: bibb77

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bibb7750
Reputation:
50
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New User
Location:
Chile
Last seen:
1 year, 4 months ago
Joined:
5 years, 8 months ago
Email:
b*****@gmail.com

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Posts by bibb77

<prev • 14 results • page 1 of 2 • next >
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Comment: C: RVtests output question.
... Hello, I have the same question and I posted it in the github webpage (https://github.com/zhanxw/rvtests/issues/50) but no answer yet. Have you figured that out? ...
written 16 months ago by bibb7750
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Is there a tool to draw local ancestry plots per chromosome?
... Dear biostars: I'm doing local ancestry estimations for GWAS data using the LAMP-LD software, I just got the results, which are ranges of ancestry across each chromosome per individual. This is small example of the output for a given chromosome: 00:1935 01:1981 02:50531 00:50937 1: Nati ...
ancestry ideogram lamp-ld written 3.4 years ago by bibb7750 • updated 2.5 years ago by michael.wathen0
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Comment: C: generate ANNOVAR input file from EXCEL
... Can you please provide an example for your list of variants? ...
written 4.0 years ago by bibb7750
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How to calculate Hudson's Fst at Population and SNP level?
... Dear BioStars community: I would like to know if there is a software or script that calculates Hudson's Fst estimator (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1205159/) at both Population and SNP level, the first to asses genetic distance between population and the second to detect highly diver ...
population differentiation fst snp written 4.0 years ago by bibb7750 • updated 5 months ago by Mr Locuace90
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Comment: C: Need Help With Circos
... Yes!, the track I want to display is about SNV densities in 100kb windows across the genome. In the axes block (not able to plot yet) I want to show lines for standard deviations, the axis plotted in the position 0.5r is showing SD = 0, so the window are near to the mean number of variants; the line ...
written 5.5 years ago by bibb7750
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Need Help With Circos
... Hi everyone, I'm making a nice circo plot for my research and I'm having a trouble trying to plot axes for several stacked data tracks, so I need to place the axes on front with the Z = 10 coordinate. In the documentation for Axes and background http://circos.ca/documentation/tutorials/quick_start/a ...
written 5.5 years ago by bibb7750
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Comment: C: Question: Can Anyone Suggest Me A Script To Do A Gene Name Rearrangement
... It worked, thank you so much, but I'm shocked that everyone are playing to be judges, giving moral advices, instead of just asking for more information if is needed. ...
written 5.5 years ago by bibb7750
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Comment: C: Question: Can Anyone Suggest Me A Script To Do A Gene Name Rearrangement
... If you think I'm not triying to solve the problem myself, your are very wrong, I'm in a hurry so I just posted the problem, but if you need more information or PROFF that Im working too, this is the AWK line that i'm triying to use but unsuccesfully: #! /bin/bash/ for i in {3..18} do gawk '{if ( ...
written 5.5 years ago by bibb7750
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Question: Can Anyone Suggest Me A Script To Do A Gene Name Rearrangement
... Hi everyone, I'm very newbie at programming, so my task is to transform this genetic data data: START END GENE 69346001 69366001 SMN2 140222001 140240001 PCDHA1 PCDHA@ PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA6 PCDHA7 PCDHA8 PCDHA9 PCDHA10 Into this: STAR ...
perl gene programming annotation awk written 5.5 years ago by bibb7750 • updated 5.5 years ago by jing10
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Comment: C: Changing To Reverse Complementary Snp Nucleotides
... Thanks. I don't know if I'm missing something but I applied your code to my input and it doesn't result like the given output file. ...
written 5.7 years ago by bibb7750

Latest awards to bibb77

Popular Question 3.3 years ago, created a question with more than 1,000 views. For Need Help With Circos
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Question: Can Anyone Suggest Me A Script To Do A Gene Name Rearrangement
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Tabix -P Vcf Error
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Is There A Tool To Extract The Reference Genomic Sequence From A Given Coordinate?
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Tabix -P Vcf Error
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Tabix -P Vcf Error

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