User: virtualinterlect

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Posts by virtualinterlect

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Stacks: Denovo.pl M, m and n paramters
... Hi everyone, I am running stacks denovo.pl, I need to try different M, m and n values to know the best for my samples. I would like to know if I can run various parameters at once using different PBS script since I have some nodes that is free. Like running M=3, M=4, M=5 at once. ...
rad-seq assembly stacks snp written 10 days ago by virtualinterlect0
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Stacks 1.44 Error
... Hi, I installed stacks using conda, and stacks 1.44 was installed. However, I would have loved to have the recent version 2.53 at least. I decided to run `denovo.pl` on the version 1.44 and the error message I got was Unknown command line option: '--popmap' My command is denovo_map.pl ...
rad-seq stacks ddrad written 12 days ago by virtualinterlect0 • updated 12 days ago by h.mon32k
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Answer: A: Remove invariant sites from large MSA
... You can try this "Script for removing or counting invariant sites for the RAxML ascertainment bias corrections" https://github.com/btmartin721/raxml_ascbias ...
written 6 weeks ago by virtualinterlect0

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