User: blacktomato27

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Posts by blacktomato27

<prev • 22 results • page 1 of 3 • next >
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Comment: C: how to make bootstrapped tree in PVCLUST package with SNP genotyping data?
... Dear Kevin thanks lot for your help and your code working perfectly Great help Regards ...
written 11 days ago by blacktomato2720
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Answer: A: how to make bootstrapped tree in PVCLUST package with SNP genotyping data?
... Dear Kevin Good Morning Thanks lot for your help and time spent on solving my problem. I formatted my data as you suggested like 0,1,2 but for some reason it is not working as expected, ok leave it I will go through PVCLUST package only. I would like to know how I can use your above function to run ...
written 13 days ago by blacktomato2720
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how to make bootstrapped tree in PVCLUST package with SNP genotyping data?
... Hi to all Good Afternoon I would like to make genetic tree with SNP genotyping data contains data of 20 genotypes with 394 markers and the same would like to validate with bootstrapping technique. This is my data https://www.dropbox.com/s/7mimhjh94550uaq/SNP%20genotyping%20data.csv?dl=0 Now I am ...
R written 15 days ago by blacktomato2720
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Friederike Good Morning Thanks lot for your time in helping to solve my query. I will follow your recommendation to make separate file for ever separate parent pair and it will easy to understand and no confusion. @cristian thanks for your recommendation to this useful course in R Once thanks ...
written 21 days ago by blacktomato2720
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Friederike Thank you very much for your kind and prompt reply to my request. I just modified your code little bit, till last step it is working fine but finally I am unable to format off_par. Now I am sharing my data file (https://www.dropbox.com/s/tysf6p3xdin9lop/biostars.xlsx?dl=0) and code ...
written 22 days ago by blacktomato2720
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Both Cristian and Friederike Good Afternoon I have one more small query on your answer, will this code work if i want to repeat this analysis for next set like (different parents and individuals) like this Ind M1 M2 M3 M4 M5 1 P1 A/A Unused G/A T/T T/T 2 P2 T/T A/A A/A A/A G/G ...
written 23 days ago by blacktomato2720
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Both Cristian and Friederike Good Morning Thanks lot for your help and time spent to solve my problem. Both of your code working perfectly and I am getting results as per my wish Once again thanks Regards, ...
written 27 days ago by blacktomato2720
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Comment: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Cristian Thanks lot for your help in solving this problem if anyone of the parent either P1 or P2 are not homozygous (i.e. like A/T etc) or the data not available i do not want them in output and i will consider them as monomorphic that is the reason M2 and M3 are not in output and I will not c ...
written 28 days ago by blacktomato2720
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... Dear Cristian Thanks lot for your help i got this error while executing first part Error in Ops.factor(df$M1[1], df$M2[2]) : level sets of factors are different but i solved like this i <- sapply(df, is.factor) df[i] <- lapply(df[i], as.character) Now i succefully got M ...
written 28 days ago by blacktomato2720 • updated 28 days ago by genomax34k
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how to compare 1st row and 1st column value with rest of the row values in R?
... hi o all i have data like this Ind M1 M2 M3 M4 M5 P1 A/A Unused G/A T/T T/T P2 T/T A/A A/A A/A G/G 1 T/A A/A G/A T/T G/G 2 T/T A/A G/A T/T T/G 3 T/T A/A G/A T/T T/G 4 T/T A/A G/A A/T G/G 5 T/A A/A G/A A/T T/G First:i want to check whether P1 and P2 match each other ...
R written 28 days ago by blacktomato2720

Latest awards to blacktomato27

Scholar 15 days ago, created an answer that has been accepted. For A: how to compare 1st row and 1st column value with rest of the row values in R?
Popular Question 15 months ago, created a question with more than 1,000 views. For Snp Selection For Genotyping
Popular Question 15 months ago, created a question with more than 1,000 views. For Perl Script To Select Snp Assays
Popular Question 3.2 years ago, created a question with more than 1,000 views. For how to make separate scatter graphs for separate groups with same format in R?

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