User: qmarulfiz

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qmarulfiz40
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Posts by qmarulfiz

<prev • 6 results • page 1 of 1 • next >
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Select list of nodes in Cytoscape
... Maybe I didnt pay enough attention in the tutorial. But I am stuck now. I have a network. It has 3 ID (MGI Gene symbol, Entrez ID, Ensmbl ID) I also have a list of GO Terms with ID of their genes in Entrez ID in a seperate .txt (opened using Excel). I want to group the genes in the network into the ...
biological network gene ontology cytoscape written 1 day ago by qmarulfiz40
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What object in GEO2R R code environment to use for ggplot2 Volcano and listing DEG?
... Hi, I copy the R script from GEO2R into my RStudios. I want to create a table in R that contain Different Expressed Gene list that show Gene Entrez ID, Log2 Fold Change, adjusted p-value and P-value. The object that I call to display these information still contain multiple Gene ID and Gene.Symbo ...
array R bioconductor geo2r written 13 days ago by qmarulfiz40
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Comment: C: Where to start? Newbie trying to enter the world of computational biology gettin
... Thank you for your suggestions! I look at GTEx and the list of co-expressed genes and TF are very useful for me! ...
written 27 days ago by qmarulfiz40
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Comment: C: Where to start? Newbie trying to enter the world of computational biology gettin
... Thank you for your advice! I use R now to access metadata from proteomic study and RNA-seq study and visualise it into plot. Most of the proteomic study and RNA-seq study does not look at my gene/protein. But I can access my gene results from their meta-data using R. To access and extract the inf ...
written 27 days ago by qmarulfiz40
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Comment: C: Where to start? Newbie trying to enter the world of computational biology gettin
... Thank you for your advice and recommendation! Here are some updates on my journey. In the end I scourge the internet for my fellow countrymen that have some knowledge about this thing. I found another PhD student doing NGS stuff. Although he does not know how to do as my complicated questions, he d ...
written 27 days ago by qmarulfiz40
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Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
... Honestly, the past months have been overwhelm for me. My professor in this first world country universty task me with a simple question for me to complete my PhD (due in 5 month). "Look online for gene 'A' pathway network and come back with expression pattern of its associated genes in different ...
R forum cytoscape rna-seq written 5 weeks ago by qmarulfiz40 • updated 25 days ago by legitsdocuments0

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