User: alexej.knaus
alexej.knaus • 120
- Reputation:
- 120
- Status:
- New User
- Location:
- Berlin
- Website:
- www.gene-talk.de
- Last seen:
- 6 years, 4 months ago
- Joined:
- 6 years, 9 months ago
- Email:
- k****@gene-talk.de
My name is Alex, and I am working for GeneTalk at the Charite in Berlin. I do the user support and help at any technical issues.
You can read about GeneTalk here: http://seqanswers.com/wiki/GeneTalk or just visit www.gene-talk.de
I have expertise on variant filtering, variant calling, actually anything related to variants and VCF files and how to obtain them and so on...
so if any of you would like to have assistance in human variant analysis, do not hesitate to contact me.
PS.: also follow me on twitter: @Gene_Talk
Posts by alexej.knaus
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... Hi, BioStars
to test an assmumption I am looking for exome or genome NGS data from sinblings of consanguineous parents. The data would be used confidentially and anonymized.
If you have such genetic data in a public database, know where to find it, or could provide it for my research purpose, I wo ...
written 6.4 years ago by
alexej.knaus • 120
• updated
6.4 years ago by
JC ♦ 10k
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... Visit GeneTalk (www.gene-talk.de) and perform an inheritance filter step (look for dominant variants) after you have uploaded the multiple VCF file and set up the pedigree information.
...
written 6.5 years ago by
alexej.knaus • 120
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... Comments and reviews are appreciated.
...
written 6.5 years ago by
alexej.knaus • 120
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... sorry, but I do not understand your question,
GeneTalk is only available vor human variant files...
...
written 6.5 years ago by
alexej.knaus • 120
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Forum:
Estimating Exome Genotyping Accuracy By Comparing To Data From Large Scale Sequencing Projects
... A paper was published in Genome Medicine about how genotyping accuracy is estimated by comparing variant data with data from large scale sequencing projects such as the 1000 Genomes Project: Estimating Exome Genotyping Accuracy by Comparing to Data from Large Scale Sequencing Projects
Quality metri ...
written 6.5 years ago by
alexej.knaus • 120
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... Use GeneTalk to analyze human variants and talk about it.
register at www.gene-talk.de for free
upload VCF files onto your account
your VCF files will be annotated and during the preprocessing step a quality assesment will be performed (if file contains more than 10.000 lines)
filter your file wi ...
written 6.5 years ago by
alexej.knaus • 120
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Answer:
A: Drag-And-Drop Vcfsplit Tool
... If anybody does not want to install software use the online platfrom GeneTalk:
Register at www.Gene-Talk.de
Upload a multiple VCF file onto your account
Take a look in the file manager and open, download or filter the multiple VCF or the singe VCF files.
other way round...
Upload several singl ...
written 6.5 years ago by
alexej.knaus • 120
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... GeneTalk - www.gene-talk.de (not cloud, but genomics company)
...
written 6.5 years ago by
alexej.knaus • 120
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... ah yeah, thats correct! only VCF files that are hg19 referenced will work with GeneTalk...
...
written 6.7 years ago by
alexej.knaus • 120
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... You could also try GeneTalk: sign up and create an account, upload your data. You can create a collection from your data and filter it with several tools
Visit http://www.gene-talk.de ...
written 6.7 years ago by
alexej.knaus • 120
• updated
5 months ago by
RamRS ♦ 27k
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