User: Bio_ysl

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Bio_ysl20
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Spain
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2 years, 5 months ago
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5 years, 6 months ago
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Posts by Bio_ysl

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Bioinformatics Training On Next-Generation Sequencing Data
... Hi, If you are just starting on NGS, I would strongly recommend you this online course based 100% on R; http://www.biocloudservices.com/ngs-course.html ...
written 2.5 years ago by Bio_ysl20
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Comment: C: Links To Good Next Gen Sequence Analysis Training Courses And Centres
... Hi, If you are just starting on NGS, I would strongly recommend you this online course based 100% on R; http://www.biocloudservices.com/NGS-course.html ...
written 2.5 years ago by Bio_ysl20
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Answer: A: Links To Good Next Gen Sequence Analysis Training Courses And Centres
... If you are just starting on NGS, I would strongly recommend you this online course; http://www.biocloudservices.com/NGS-course.html ...
written 2.5 years ago by Bio_ysl20
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Answer: A: Bioinformatics Training On Next-Generation Sequencing Data
... If you are just starting on NGS, I would strongly recommend you this online course; http://www.biocloudservices.com/NGS-course.html ...
written 2.5 years ago by Bio_ysl20
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Tophat2 Bowtie2 inchoerent results?
... I am trying to align paired-end data from Illumina (300bp x 2) to a draft genome. First of all I use Trimmomatic to remove adapters and bad quality ends. later I tried to map the reads; first with Bowtie2 alone and later with TopHat2 (which uses Bowtie2). Bowtie2 alone mapped about 68% of the reads ...
bowtie2 tophat ngs rna-seq mapping written 4.3 years ago by Bio_ysl20
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Comment: C: Problem With Fpkm In Cufflinks
... Yes, 10^9 should be correct... If there is any correlation I couldn't see it, and this is what creates me so many doubts... ...
written 5.5 years ago by Bio_ysl20
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Comment: C: Problem With Fpkm In Cufflinks
... Thank you for the answer! But in this case, we are talking about a denovo assemble done with MIRA3, I'm not sure if a read can be assembled in more than one contig.... ...
written 5.5 years ago by Bio_ysl20
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Problem With Fpkm In Cufflinks
... Hello, I'm having some problems to understand the Cufflinks FPKMs... I use Cufflinks to obtain the FPKMs froma a ".sam" file obtained from the denovo assembly permormed wit MIRA3 of a transcriptome. Cufflinks give me us an output the files "Isoforms.fpkm_trasckin" and "genes.fpkm_tracking", in both ...
rpkm fpkm differential-expression cufflinks transcriptome written 5.6 years ago by Bio_ysl20 • updated 5.6 years ago by Chris Cabanski320

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For Problem With Fpkm In Cufflinks

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