User: Sishuo Wang

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Sishuo Wang180
Reputation:
180
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Trusted
Location:
The University of British Columbia
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Google Scholar Page
Last seen:
18 hours ago
Joined:
6 years, 2 months ago
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t**********@gmail.com

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Posts by Sishuo Wang

<prev • 59 results • page 1 of 6 • next >
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Comment: C: Extract genes from gbk file.
... hi, you may want to try [this one][1] [1]: http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/genbank2fasta/ ...
written 25 days ago by Sishuo Wang180
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Answer: A: Phylogenetic tree with 0,1 matrix as the input?
... hi shicheng, i think both [raxml][1] and [iq-tree][2] can work with binary data. [1]: https://cme.h-its.org/exelixis/web/software/raxml/hands_on.html [2]: http://www.iqtree.org/doc/Tutorial ...
written 29 days ago by Sishuo Wang180
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Comment: C: Downloading all eucaryote mitochondrial genomes
... Hi Eric, Give [this link][1] a try! It is curated by NCBI RefSeq. [1]: https://www.ncbi.nlm.nih.gov/genome/organelle/ ...
written 12 weeks ago by Sishuo Wang180
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Comment: C: hisat2 installation error
... you can try the precompiled one or [this link][1]? [1]: https://www.biostars.org/p/328289/ ...
written 3 months ago by Sishuo Wang180
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Comment: C: Is it possible to detect lncRNA in a de novo assembled genome?
... Yes, if those transcripts are long enough and do not have any coding potential. ...
written 3 months ago by Sishuo Wang180
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Comment: C: Run RepeatMasker problems
... This might be helpful. [solution][1] [1]: https://github.com/bioconda/bioconda-recipes/issues/13562 ...
written 7 months ago by Sishuo Wang180
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Comment: A: How to generate partition file for raxmlHPC analysis?
... Hi, The following three could be helpful. [catsequences][1] [supermat][2] [SuperCRUNCH][3] [1]: https://github.com/ChrisCreevey/catsequences [2]: https://rdrr.io/cran/phylotools/man/supermat.html [3]: https://www.biorxiv.org/content/10.1101/538728v1 ...
written 7 months ago by Sishuo Wang180
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Comment: C: Protein Fold and PDB id
... I think [SCOP][1] and [CATH][2] can be helpful. [1]: http://scop.mrc-lmb.cam.ac.uk/scop/ [2]: http://cathdb.info ...
written 7 months ago by Sishuo Wang180
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Comment: C: Weighted sequence logos and motifs
... Maybe to duplicate the sequences based on the weight as the input? ...
written 7 months ago by Sishuo Wang180
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Comment: C: How to extract intronic regions from a Genbank file?
... You may wish to try this one [gff2fasta][1] by specifying the feature (--feature; Line 499 in the Perl script). [1]: https://github.com/minillinim/gff2fasta ...
written 10 months ago by Sishuo Wang180

Latest awards to Sishuo Wang

Voter 12 months ago, voted more than 100 times.
Supporter 4.0 years ago, voted at least 25 times.

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