User: Sishuo Wang
Sishuo Wang • 180
- Reputation:
- 180
- Status:
- Trusted
- Location:
- The University of British Columbia
- Scholar ID:
- Google Scholar Page
- Last seen:
- 18 hours ago
- Joined:
- 6 years, 2 months ago
- Email:
- t**********@gmail.com
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Posts by Sishuo Wang
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Comment:
C: Extract genes from gbk file.
... hi,
you may want to try [this one][1]
[1]: http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/genbank2fasta/ ...
written 25 days ago by
Sishuo Wang • 180
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... hi shicheng, i think both [raxml][1] and [iq-tree][2] can work with binary data.
[1]: https://cme.h-its.org/exelixis/web/software/raxml/hands_on.html
[2]: http://www.iqtree.org/doc/Tutorial ...
written 29 days ago by
Sishuo Wang • 180
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... Hi Eric,
Give [this link][1] a try! It is curated by NCBI RefSeq.
[1]: https://www.ncbi.nlm.nih.gov/genome/organelle/ ...
written 12 weeks ago by
Sishuo Wang • 180
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Comment:
C: hisat2 installation error
... you can try the precompiled one or [this link][1]?
[1]: https://www.biostars.org/p/328289/ ...
written 3 months ago by
Sishuo Wang • 180
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... Yes, if those transcripts are long enough and do not have any coding potential. ...
written 3 months ago by
Sishuo Wang • 180
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344
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Comment:
C: Run RepeatMasker problems
... This might be helpful.
[solution][1]
[1]: https://github.com/bioconda/bioconda-recipes/issues/13562 ...
written 7 months ago by
Sishuo Wang • 180
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... Hi,
The following three could be helpful.
[catsequences][1]
[supermat][2]
[SuperCRUNCH][3]
[1]: https://github.com/ChrisCreevey/catsequences
[2]: https://rdrr.io/cran/phylotools/man/supermat.html
[3]: https://www.biorxiv.org/content/10.1101/538728v1 ...
written 7 months ago by
Sishuo Wang • 180
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Comment:
C: Protein Fold and PDB id
... I think [SCOP][1] and [CATH][2] can be helpful.
[1]: http://scop.mrc-lmb.cam.ac.uk/scop/
[2]: http://cathdb.info ...
written 7 months ago by
Sishuo Wang • 180
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... Maybe to duplicate the sequences based on the weight as the input? ...
written 7 months ago by
Sishuo Wang • 180
0
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... You may wish to try this one [gff2fasta][1] by specifying the feature (--feature; Line 499 in the Perl script).
[1]: https://github.com/minillinim/gff2fasta ...
written 10 months ago by
Sishuo Wang • 180
Latest awards to Sishuo Wang
Voter
12 months ago,
voted more than 100 times.
Supporter
4.0 years ago,
voted at least 25 times.
Popular Question
4.9 years ago,
created a question with more than 1,000 views.
For Which software can be used to visualize phylogenetic trees with a large number of OTUs (e.g. 50,000)
Student
5.3 years ago,
asked a question with at least 3 up-votes.
For Which software can be used to visualize phylogenetic trees with a large number of OTUs (e.g. 50,000)
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