User: cschu181

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Posts by cschu181

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Comment: C: How do I predict consensus RNA structures?
... Maybe that is the consensus, in which case the structures of your RNAs are not very similar. I haven't worked in RNA structure for quite a while, so I might be missing something. To validate you could take a handful of tRNA sequences and see how the output looks like for those. ...
written 4 hours ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... https://www.tbi.univie.ac.at/RNA/RNAalifold.1.html :) ...
written 1 day ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... RNAalifold maybe (Vienna Package) ...
written 1 day ago by cschu1811.4k
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Answer: A: Tools to analyse DNA methylation sequencing data?
... Bismark, Bicycle, gemBS, BSeeker ...
written 4 days ago by cschu1811.4k
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Comment: C: Proper journal for publication
... How about a talk when someone presents the "bioinformatics" of the project, which are a handful of tables that someone pulled from a public web interface? ...
written 11 days ago by cschu1811.4k
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Comment: C: Proper journal for publication
... Clearly short RNAseq processed by Galaxy. :D ...
written 11 days ago by cschu1811.4k
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Comment: C: Proper journal for publication
... It is a bit difficult to judge whether "some bioinformatics" are enough for any journal. This term really could mean anything between aligning a handful of reads to a reference and building/applying a dedicated pipeline for plant (I assume you mean plant and not planet) miRNA activity on the human ...
written 11 days ago by cschu1811.4k
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Comment: C: Genome annotation using transcriptome data
... I think Augustus can take transcript data as input. I would go with Michael's approach (genome-guided transcript assembly) as well as denovo transcript assemblies with different assemblers and then maybe have a look at [Mikado][1]. When you have a set of transcripts with support by your RNA-seq, yo ...
written 15 days ago by cschu1811.4k
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Job: Senior Bioinformatician / Developer (Genome Annotation), Earlham Institute, Norwich, UK
... The Earlham Institute (EI) is seeking an enthusiastic and focused Senior Bioinformatician/Developer to join the Core Bioinformatics Group. [Click here to apply][1] **The role:** This post will focus on developing novel tools and pipelines for large scale annotation of genes and other genomic feat ...
bioinformatics annotation job genomics python written 21 days ago by cschu1811.4k • updated 21 days ago by genomax55k
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Job: Senior Bioinformatician / Developer (Analysis Pipelines), Earlham Institute, Norwich, UK
... The Earlham Institute (EI) is seeking an enthusiastic and focused Senior Bioinformatician/Developer to join the Core Bioinformatics Group. [Click here to apply][1] **The role:** The successful candidate will be responsible for designing, implementing, testing and maintaining production-quality, h ...
bioinformatics pipelines scripting job python written 21 days ago by cschu1811.4k • updated 21 days ago by genomax55k

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