User: cschu181
cschu181 • 1.4k
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Posts by cschu181
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... Maybe that is the consensus, in which case the structures of your RNAs are not very similar. I haven't worked in RNA structure for quite a while, so I might be missing something. To validate you could take a handful of tRNA sequences and see how the output looks like for those. ...
written 4 hours ago by
cschu181 • 1.4k
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... https://www.tbi.univie.ac.at/RNA/RNAalifold.1.html :) ...
written 1 day ago by
cschu181 • 1.4k
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... RNAalifold maybe (Vienna Package) ...
written 1 day ago by
cschu181 • 1.4k
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... Bismark, Bicycle, gemBS, BSeeker ...
written 4 days ago by
cschu181 • 1.4k
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Comment:
C: Proper journal for publication
... How about a talk when someone presents the "bioinformatics" of the project, which are a handful of tables that someone pulled from a public web interface? ...
written 11 days ago by
cschu181 • 1.4k
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Comment:
C: Proper journal for publication
... Clearly short RNAseq processed by Galaxy. :D ...
written 11 days ago by
cschu181 • 1.4k
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Comment:
C: Proper journal for publication
... It is a bit difficult to judge whether "some bioinformatics" are enough for any journal. This term really could mean anything between aligning a handful of reads to a reference and building/applying a dedicated pipeline for plant (I assume you mean plant and not planet) miRNA activity on the human ...
written 11 days ago by
cschu181 • 1.4k
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... I think Augustus can take transcript data as input. I would go with Michael's approach (genome-guided transcript assembly) as well as denovo transcript assemblies with different assemblers and then maybe have a look at [Mikado][1].
When you have a set of transcripts with support by your RNA-seq, yo ...
written 15 days ago by
cschu181 • 1.4k
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... The Earlham Institute (EI) is seeking an enthusiastic and focused Senior Bioinformatician/Developer to join the Core Bioinformatics Group.
[Click here to apply][1]
**The role:**
This post will focus on developing novel tools and pipelines for large scale annotation of genes and other genomic feat ...
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... The Earlham Institute (EI) is seeking an enthusiastic and focused Senior Bioinformatician/Developer to join the Core Bioinformatics Group.
[Click here to apply][1]
**The role:**
The successful candidate will be responsible for designing, implementing, testing and maintaining production-quality, h ...
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