User: cschu181

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Posts by cschu181

<prev • 251 results • page 1 of 26 • next >
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Comment: C: total beginner trying to learn about quality control
... It does. By default, FastQC creates a directory with text output in addition to the .html. One can choose the --noextract option to keep that directory as a zipped archive. ...
written 3 days ago by cschu1811.4k
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Comment: C: total beginner trying to learn about quality control
... I'm fairly sure you can export the report tables. ...
written 4 days ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... Try http://rfam.xfam.org. ...
written 7 weeks ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... Maybe that is the consensus, in which case the structures of your RNAs are not very similar. I haven't worked in RNA structure for quite a while, so I might be missing something. To validate you could take a handful of tRNA sequences and see how the output looks like for those. ...
written 8 weeks ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... https://www.tbi.univie.ac.at/RNA/RNAalifold.1.html :) ...
written 8 weeks ago by cschu1811.4k
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Comment: C: How do I predict consensus RNA structures?
... RNAalifold maybe (Vienna Package) ...
written 8 weeks ago by cschu1811.4k
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Answer: A: Tools to analyse DNA methylation sequencing data?
... Bismark, Bicycle, gemBS, BSeeker ...
written 8 weeks ago by cschu1811.4k
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Comment: C: Proper journal for publication
... How about a talk when someone presents the "bioinformatics" of the project, which are a handful of tables that someone pulled from a public web interface? ...
written 9 weeks ago by cschu1811.4k
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Comment: C: Proper journal for publication
... Clearly short RNAseq processed by Galaxy. :D ...
written 9 weeks ago by cschu1811.4k
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Comment: C: Proper journal for publication
... It is a bit difficult to judge whether "some bioinformatics" are enough for any journal. This term really could mean anything between aligning a handful of reads to a reference and building/applying a dedicated pipeline for plant (I assume you mean plant and not planet) miRNA activity on the human ...
written 9 weeks ago by cschu1811.4k

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