User: jack

gravatar for jack
jack370
Reputation:
370
Status:
New User
Location:
Last seen:
3 years, 6 months ago
Joined:
4 years ago
Email:
k*****@yahoo.com

about me

Posts by jack

<prev • 81 results • page 1 of 9 • next >
0
votes
0
answers
886
views
0
answers
Genome Version Of Targetscan
... I'm using TargetScan for prediction of miRNA targets. Does anyone knows which genome/transcriptom(e.g hg19,...) version for human are used in TargetScan ? ...
bioinformatician written 3.5 years ago by jack370 • updated 17 months ago by Biostar ♦♦ 20
2
votes
1
answer
2.1k
views
1
answer
When And Where Should I Rpkm,Fpkm And Rpm For Rnaseq Data Normalization
... I have RNA seq data for the miRNA and mRNA. I wonder whether I should use same normalization methods for both of them or I can use different normalization methods for them. sometime in some papers I saw that, they used RPM for miRNA and RPKM for mRNA, but I don't know why. ...
written 3.5 years ago by jack370 • updated 3.5 years ago by Istvan Albert ♦♦ 74k
0
votes
1
answer
1.0k
views
1
answer
Which Platform And Batches Should I Select From Tcga For My Study?
... I want to get data from TCGA to build a gene regulatory network for one of the cancer. I have a few questions out of it: 1) Should I select one type of Center/Platform for getting data? 2) What is the different batches of data? Is it recommended to have all baches of my data from one type of canc ...
tcga written 3.5 years ago by jack370 • updated 3.5 years ago by Charles Warden4.9k
0
votes
2
answers
4.7k
views
2
answers
Comment: C: Looking For Bioinformatics Job In Germany
... I'm looking for research oriented job. so PhD would be great. ...
written 3.5 years ago by jack370
10
votes
2
answers
4.7k
views
9 follow
2
answers
Forum: Looking For Bioinformatics Job In Germany
... Hi everyone, I'm master student of bioinformatics. I have good background in biological science and also solid knowledge in machine learning and statistical learning. In my master thesis, I worked with NGS data at Germany. Currently I'm looking form bioinformatics jobs at Germany, but I don't have ...
forum job bioinformatician written 3.5 years ago by jack370 • updated 3.2 years ago by linus320
26
votes
6
answers
9.1k
views
11 follow
6
answers
How To Run R Script On Multiple Core To Process Huge Biological Data?
... Hi all, I've written R script. The purpose of this script is processing expression data and building around 100000 models from it. Since the computation load is too high, it's necessary to run this script on multiple cores and when I run it on the server, it is just using one of the CPUs. Is there ...
R programming written 3.6 years ago by jack370
0
votes
8
answers
21k
views
8
answers
Comment: C: Survival Analysis Using Tcga Data
... Thanks, but what is "xsd_ver="1.12" ? ...
written 3.6 years ago by jack370
0
votes
8
answers
21k
views
8
answers
Comment: C: Survival Analysis Using Tcga Data
... Thank, but which value I should take it out. I've looked at XML file of it and I found the line with tage "days_to_death" it's like this : shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable"/> ...
written 3.6 years ago by jack370
26
votes
8
answers
21k
views
23 follow
8
answers
Survival Analysis Using Tcga Data
... I'm using TCGA gene expression data. At some part of my work I need to do survival analysis . I wonder to know that, is there any way to get some information from TCGA to do survival analysis of the sample which I have gene expression of them? ...
tcga bioinformatician written 3.6 years ago by jack370 • updated 4 months ago by xushutan20
0
votes
1
answer
2.2k
views
1
answers
Comment: C: Which Statistics Should Be Applied To Determine Whether A Certain Motif Is Signi
... You can compute P-value for them. ...
written 3.6 years ago by jack370

Latest awards to jack

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1277 users visited in the last hour