User: sixthirty

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sixthirty0
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Posts by sixthirty

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Comment: C: Phasing vcf file with Beagle
... I tried to phase with WhatsHap but only part of my heterozygous genotypes are phased. Also, I don't have the bam files for all the families so I am looking for a way to phase my vcf files without having to use bam files. Are you sure that trio phasing isn't possible with Beagle ? This documentatio ...
written 10 days ago by sixthirty0
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Comment: C: Phasing vcf file with Beagle
... Thank you for your answer. I am working on human data. My vcf file contains variants for a family of 4 individuals based on the GRCh37 genome and contains around 431000 variants. ...
written 13 days ago by sixthirty0
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Phasing vcf file with Beagle
... Hello all, I tried to phase my vcf files with Beagle. All the genotypes seem to be phased but the INFO field containing annotations of interest disappeared and I want to keep it. How can I do that ? In case it's not possible to keep the INFO field with Beagle, is there a way to fuse my new phased ...
vcf beagle haplotype phasing bash written 13 days ago by sixthirty0

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