User: Pablo Pareja

gravatar for Pablo Pareja
Pablo Pareja1.6k
Reputation:
1,590
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Location:
Granada, Spain
Website:
http://about.me/pablop...
Last seen:
2 years, 2 months ago
Joined:
6 years, 10 months ago
Email:
p******@era7.com

Currently working as Bioinformatics consultant/developer/researcher @ohnosequences (http://www.ohnosequences.com) Amateur musician, traveller, sporadic writer and always eager to learn more about languages, plants...

too many things to do and too little time for it!

Posts by Pablo Pareja

<prev • 68 results • page 1 of 7 • next >
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How do MetaCyc and Expasy Enzyme database contents relate to each other?
... Hi everyone, I was wondering what's the exact relationship between the contents of these two databases: Metacyc Expasy Enzyme DB Are the contents of any of the two somewhat included in the other one? Thanks in advance! ...
metacyc expasy enzyme databases metabolic-pathways written 2.7 years ago by Pablo Pareja1.6k • updated 2.7 years ago by Elisabeth Gasteiger1.2k
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Comment: C: Last Common Ancestor From Ncbi Taxonomy Using Java
... @Sudeep thanks, glad you like it! ...
written 5.6 years ago by Pablo Pareja1.6k
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Answer: A: Last Common Ancestor From Ncbi Taxonomy Using Java
... Hi, I just published a blog post about how you can achieve that (also extended to a set of nodes with an arbitrary length) with Bio4j http://blog.bio4j.com/2012/02/finding-the-lowest-common-ancestor-of-a-set-of-ncbi-taxonomy-nodes-with-bio4j/ Hope it's useful ;) Pablo ...
written 5.6 years ago by Pablo Pareja1.6k
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Answer: A: What Wetlab Techniques Does A Bioinformatician Need To Be Able To Perform, If An
... perform? None ;) ...
written 5.9 years ago by Pablo Pareja1.6k
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Comment: C: Isoforms Missing In Uniprot Isoforms Fasta File
... Thanks for your quick answer, I have a few remarks about this though. Why not including information about the isoform like name and sequence in the XML files? Besides that, I just downloaded the file uniprot_sprot.fasta and there is no entry for the isoform Q8IYH5-1 here either. Should it be somewhe ...
written 5.9 years ago by Pablo Pareja1.6k
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Isoforms Missing In Uniprot Isoforms Fasta File
... Hi, I just ran into a problem regarding isoforms specified in Uniprot XML files which are not present in the 'every' isoform fasta file available in Uniprot. One example would be the protein: Q8IYH5 where we can find the following isoforms: <comment type="alternative products"> <event t ...
fasta xml protein uniprot isoform written 5.9 years ago by Pablo Pareja1.6k • updated 5.9 years ago by Elisabeth Gasteiger1.2k
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Comment: C: Biological Network With Goid
... Hi pablo, what would you like to visualize exactly? just the relationships between the GO terms? ...
written 5.9 years ago by Pablo Pareja1.6k
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Comment: C: Problematic Representantive Members Found In Uniref 100/90/50 Xml Files
... @Raquel Tobes & @jerven thanks for the info ;) ...
written 5.9 years ago by Pablo Pareja1.6k
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Problematic Representantive Members Found In Uniref 100/90/50 Xml Files
... Hi, I'm currently working on preparing a new release of Bio4j and I just ran into a problem with Uniref 100/90/50 XML files. I found out how there are a lot of representative members that don't comply with the expected XML syntax, because either things are specified in a different way or there's m ...
xml uniprot written 5.9 years ago by Pablo Pareja1.6k • updated 5.9 years ago by Pmcgarvey20
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Answer: A: Should Biostar Be Switched Over To The Stackexchange Network?
... +1 for the migration to the StackExchange Network, which already is without any doubt the standard for Q&A sites such as Biostar. ...
written 5.9 years ago by Pablo Pareja1.6k • updated 5.9 years ago by Giovanni M Dall'Olio25k

Latest awards to Pablo Pareja

Popular Question 2.7 years ago, created a question with more than 1,000 views. For Should General Programming Questions Actually Be Posted To Biostar?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Problematic Representantive Members Found In Uniref 100/90/50 Xml Files
Guru 4.4 years ago, received more than 100 upvotes.
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Retrieving Uniprot Protein Isoform Sequences Programmatically?
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Does Ec2 Have Fast And Cheap Shared File Systems?
Autobiographer 4.4 years ago, has more than 80 characters in the information field of the user's profile.
Supporter 4.4 years ago, voted at least 25 times.
Teacher 5.6 years ago, created an answer with at least 3 up-votes. For A: Last Common Ancestor From Ncbi Taxonomy Using Java
Good Answer 5.9 years ago, created an answer that was upvoted at least 5 times. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Appreciated 5.9 years ago, created a post with more than 5 votes. For A: Should Biostar Be Switched Over To The Stackexchange Network?
Good Question 6.0 years ago, asked a question that was upvoted at least 5 times. For Is There A Way To Tell Apart Two Different Authors With The Same Name In Uniprot Or Pubmed ?
Good Answer 6.1 years ago, created an answer that was upvoted at least 5 times. For A: Does Ec2 Have Fast And Cheap Shared File Systems?
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Does Ec2 Have Fast And Cheap Shared File Systems?
Appreciated 6.1 years ago, created a post with more than 5 votes. For A: Does Ec2 Have Fast And Cheap Shared File Systems?
Teacher 6.1 years ago, created an answer with at least 3 up-votes. For A: Is There A Tool To Give A Visual Output Of A Pathway And Expression Data?
Student 6.2 years ago, asked a question with at least 3 up-votes. For Should General Programming Questions Actually Be Posted To Biostar?
Teacher 6.2 years ago, created an answer with at least 3 up-votes. For A: How Do People Go About Pubmed Text Mining
Good Answer 6.2 years ago, created an answer that was upvoted at least 5 times. For A: How Can I Plot Go Data Using R Or Any Tools?
Appreciated 6.2 years ago, created a post with more than 5 votes. For A: How Can I Plot Go Data Using R Or Any Tools?

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