User: natasha.sernova

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natasha.sernova3.1k
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Posts by natasha.sernova

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Comment: C: How can I find the the helixID and length of each helix in a PDB file please
... See also this link. https://proteinstructures.com/Structure/Structure/proteinstructure-databases2.html There is some useful information inside. ...
written 16 days ago by natasha.sernova3.1k
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Comment: C: How can I find the the helixID and length of each helix in a PDB file please
... I did. Let's consider this line: HELIX 47 AF2 ASN B 439 LYS B 451 1 13 This is helix 47 of subunit B starting from asparagine 439 going to lysine 451. Its length is 13 amino acids. ...
written 17 days ago by natasha.sernova3.1k • updated 16 days ago by RamRS19k
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Answer: C: How can I find the the helixID and length of each helix in a PDB file please
... Your PDB file has HELIX and SHEET records describing where secondary structure exists. I found 23 HELICES in subunitA (their corresponding lengths are the last number in the strings - 26,3,13,11,etc) and 24 HELICES in subunit B (their lengths are 24,3,13,11,16, etc). HELIX 1 AA1 LYS A ...
written 17 days ago by natasha.sernova3.1k • updated 16 days ago by RamRS19k
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Comment: C: Freshman puzzled by tons of statistic methods
... It's a very good place to ask questions. Go to the upper left corner of the page, find 'LATEST', press the button and insert a few words to the empty line in the middle. I've found rather old post (in the bottom), but there will be a lot of them, try. When you see an interesting title, press ...
written 5 weeks ago by natasha.sernova3.1k
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Comment: C: Hands-on training in Bioinformatics and Biomedical Data Science
... It looks great! But how much will it cost? Natasha ...
written 6 weeks ago by natasha.sernova3.1k
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Comment: C: Unexpected BLAST problem
... Yes, that's right. Sorry, it was my mistake! I didn't notice the original post. ...
written 6 weeks ago by natasha.sernova3.1k
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News: (Closed) Unexpected BLAST problem
... I am not sure I've seen it here. It’s significant for all researchers who use console BLAST with the key -max-target-seqs See the paper below for details. https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty833/5106166?redirectedFrom=fulltext ...
-max-target-seqs news blast written 6 weeks ago by natasha.sernova3.1k
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Comment: C: NEWICK format representation of the tree ?
... Let’s start from WIKI introduction: http://evolution.genetics.washington.edu/phylip/newicktree.html http://wiki.christophchamp.com/index.php?title=Newick_phylogenetic_tree_format ETEtoolkit http://etetoolkit.org/treeview/ scikit: http://scikit-bio.org/docs/0.4.1/generated/skbio.io.format.newic ...
written 7 weeks ago by natasha.sernova3.1k
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Comment: C: Postdoctoral position in evolutionary bioinformatics in Switzerland
... Dear Professor Dessimoz, The URL you provided doesn't work. ...
written 8 weeks ago by natasha.sernova3.1k
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Comment: C: convert gene IDs of Ovis aries genes to human orthologue Ensembl gene IDs in Bio
... See the following post. it looks helpful. https://www.biostars.org/p/52173/ ...
written 9 weeks ago by natasha.sernova3.1k

Latest awards to natasha.sernova

Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Scholar 6 weeks ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Scholar 7 weeks ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 3 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 4 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 5 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 6 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 7 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 7 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 14 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 16 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Scholar 16 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Epic Question 19 months ago, created a question with more than 10,000 views. For how to convert a long fasta-file into many separate single fasta sequences
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Scholar 22 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Popular Question 22 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 22 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 22 months ago, created a question with more than 1,000 views. For vcf to MAF to fasta
Scholar 23 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
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Commentator 24 months ago, created a comment with at least 3 up-votes. For C: How to find a conserved regions for a protein by phylogentic analysis tree

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