User: natasha.sernova
natasha.sernova • 3.2k
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Posts by natasha.sernova
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C: How to do a phylogenetic tree?
... phylogenetic tree from contigs - this is your question
What 5 diferent species do you study? Since it was not clear,
I found at least something in Biostars:
See these posts and links:
For bacteria:
https://www.biostars.org/p/81620/
for others:
https://www.biostars.org/p/223181/
to assemble ...
written 20 hours ago by
natasha.sernova • 3.2k
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C: Medical terms Synonyms
... See this article.
The Unified Medical Language System (UMLS): integrating biomedical terminology
Olivier Bodenreider
https://academic.oup.com/nar/article/32/suppl_1/D267/2505235
It's from 2004, but a lot of people have cited it - there should be links to some updates if needed.
See their websit ...
written 1 day ago by
natasha.sernova • 3.2k
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C: Phosphorylation status database
... Prokaryotic db:
http://dbpsp.biocuckoo.org/
Human medical db:
http://phossnp.biocuckoo.org/
The article:
A Summary of Computational Resources for Protein Phosphorylation
http://www.biocuckoo.org/pub/CPPS.pdf
Plant phosphorylation db:
http://p3db.org/
A biostars post:
https://www.biostars.org/p/ ...
written 2 days ago by
natasha.sernova • 3.2k
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... There is a lot of information in Biostars on hapmap.
Just go to the left upper corner of the page, select LATEST and insert 'hapmap and SNP', for example.
to the empty string in the middle. You will see a lot of posts. Also see the right panel - there are a lot there as well.
I've taken one as e ...
written 2 days ago by
natasha.sernova • 3.2k
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... I hope this link to Science article may help:
https://www.researchgate.net/publication/11001030_The_Protein_Kinase_Complement_of_the_Human_Genome
http://science.sciencemag.org/content/298/5600/191 the article itself
Below there are 2 publications about many kinase inhibitors, including human on ...
written 4 days ago by
natasha.sernova • 3.2k
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137
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... There was a post several weeks ago. It may be useful to you.
https://www.biostars.org/p/348027/ ...
written 5 days ago by
natasha.sernova • 3.2k
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... Try this link:
http://www.phytopathdb.org/pathogens_eg
They have some Protist genomes:
http://www.phytopathdb.org/content/albugo-candida
http://www.phytopathdb.org/content/albugo-laibachii
http://www.phytopathdb.org/content/hyaloperonospora-arabidopsidis
http://www.phytopathdb.org/content/phyto ...
written 6 days ago by
natasha.sernova • 3.2k
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117
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... There are some article links from NCBI and other sources:
Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio).
https://onlinelibrary.wiley.com/doi/abs/10.1111/jeu.12331
Ndikumana S et al. J Eukaryot Microbiol. (2017)
Gal4 Driver Transgenic Zebrafish: ...
written 8 days ago by
natasha.sernova • 3.2k
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145
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1
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... Sure, I've removed it. Thank you! ...
written 18 days ago by
natasha.sernova • 3.2k
1
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1
answer
145
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1
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... See this link for human cells:
https://www.quora.com/How-can-human-cells-protect-themselves-from-mutations
See also this post:
https://www.biostars.org/p/158221/
There is an article from 2009:
Rate, molecular spectrum, and consequences of human mutation
Michael Lynch
https://www.pnas.org/cont ...
written 18 days ago by
natasha.sernova • 3.2k
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