User: natasha.sernova
natasha.sernova • 3.1k
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Posts by natasha.sernova
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... See also this link.
https://proteinstructures.com/Structure/Structure/proteinstructure-databases2.html
There is some useful information inside.
...
written 16 days ago by
natasha.sernova • 3.1k
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... I did.
Let's consider this line:
HELIX 47 AF2 ASN B 439 LYS B 451 1 13
This is helix 47 of subunit B starting from asparagine 439
going to lysine 451. Its length is 13 amino acids. ...
written 17 days ago by
natasha.sernova • 3.1k
• updated
16 days ago by
RamRS ♦ 19k
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... Your PDB file has HELIX and SHEET records describing where secondary structure exists.
I found 23 HELICES in subunitA (their corresponding
lengths are the last number in the strings - 26,3,13,11,etc)
and 24 HELICES in subunit B (their lengths are 24,3,13,11,16, etc).
HELIX 1 AA1 LYS A ...
written 17 days ago by
natasha.sernova • 3.1k
• updated
16 days ago by
RamRS ♦ 19k
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... It's a very good place to ask questions.
Go to the upper left corner of the page, find 'LATEST', press the button and
insert a few words to the empty line in the middle. I've found rather old post
(in the bottom), but there will be a lot of them, try.
When you see an interesting title, press ...
written 5 weeks ago by
natasha.sernova • 3.1k
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... It looks great! But how much will it cost?
Natasha ...
written 6 weeks ago by
natasha.sernova • 3.1k
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Comment:
C: Unexpected BLAST problem
... Yes, that's right. Sorry, it was my mistake! I didn't notice the original post.
...
written 6 weeks ago by
natasha.sernova • 3.1k
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... I am not sure I've seen it here.
It’s significant for all researchers who use console BLAST with the key -max-target-seqs
See the paper below for details.
https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty833/5106166?redirectedFrom=fulltext
...
written 6 weeks ago by
natasha.sernova • 3.1k
1
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1
answer
158
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... Let’s start from WIKI introduction:
http://evolution.genetics.washington.edu/phylip/newicktree.html
http://wiki.christophchamp.com/index.php?title=Newick_phylogenetic_tree_format
ETEtoolkit
http://etetoolkit.org/treeview/
scikit:
http://scikit-bio.org/docs/0.4.1/generated/skbio.io.format.newic ...
written 7 weeks ago by
natasha.sernova • 3.1k
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259
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... Dear Professor Dessimoz,
The URL you provided doesn't work. ...
written 8 weeks ago by
natasha.sernova • 3.1k
0
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158
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... See the following post. it looks helpful.
https://www.biostars.org/p/52173/ ...
written 9 weeks ago by
natasha.sernova • 3.1k
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