User: natasha.sernova
natasha.sernova • 3.6k
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Posts by natasha.sernova
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... > dna = "ATGCGATCGATCGATCGATCGCGCGCGCAGCTA" for i in range(0, len(dna),
> 3):
> codon = dna[i:i+3]
> # if codon == 'ATG':
> # print(str(i))
> print(codon, i)
> # why do you need str(i)?
> print(codon, str(i)) # - nothing i ...
written 1 day ago by
natasha.sernova • 3.6k
• updated
1 day ago by
Joe ♦ 15k
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... There are several hypervariable regions in mtDNA, I know about at least two of them.
There is a kit to extract them
https://norgenbiotek.com/sites/default/files/resources/Mitochondrial-DNA-Hypervariable-Region-I-and%20II-Insert-PI52800-1.pdf
See this article, it may help you.
mtDNA Variation and ...
written 3 days ago by
natasha.sernova • 3.6k
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... Many thanks, it's a nice group.
Since active site is labelled, it's one more chance.
https://www.biostars.org/p/97158/ ...
written 16 days ago by
natasha.sernova • 3.6k
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... Thank you very much, but I don't have any free choice. I have to use PyMol.
I'll try Chimera next time. ...
written 16 days ago by
natasha.sernova • 3.6k
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... Dear Professor Dlakic,
thank you very much indeed for your answer!
By the way, do you like PYMOL?
There are so many other tools now like CHIMERA,
etc, but my colleagues make me use PYMOL
to solve this problem, at least, to make pictures.
I'll check your links tomorrow.
Thousand thanks for your sug ...
written 16 days ago by
natasha.sernova • 3.6k
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5 follow
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... Dear all,
I’m trying to compare 4 orthologous proteins-enzymes and the corresponding pdb-files for them.
Species are rather far from each other,
so the sequences are far from identity.
Never the less their functions look close – I hope
at least their active centers have high structural identity, i ...
written 17 days ago by
natasha.sernova • 3.6k
• updated
16 days ago by
Joe ♦ 15k
2
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1
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... See this article:
A Review of Pathway-Based Analysis Tools That Visualize Genetic Variants
Elisa Cirillo,1,* Laurence D. Parnell,2 and Chris T. Evelo1
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5681904/
Below is a fragment of the article abstract:
"Pathway analysis is a powerful method for da ...
written 18 days ago by
natasha.sernova • 3.6k
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... In mouse (and human) RNA-regulation is preferred.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249886/
“With the advent of transcriptomic studies, it was revealed that only 2% of the genome has protein-coding capacity [1, 2], and the vast majority of transcripts that do not have protein coding c ...
written 25 days ago by
natasha.sernova • 3.6k
0
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102
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... See the following recent article, it enumerates a lot of such databases.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856276/
In silico prediction of cancer immunogens: current state of the art
Irini A. Doytchinova1 and Darren R. Flower
See also this article, it looks close to your question.
h ...
written 4 weeks ago by
natasha.sernova • 3.6k
0
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114
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... Search this site
https://sourceforge.net/p/pymol/mailman/message/28460905/
and finally you will find the following post:
From: Thomas Holder - 2011-11-28 14:35:14
<>
most trivial manner:
as cartoon
show sticks, resn LEU+ILE+VAL
set cartoon_side_chain_helper
and eventually something like ...
written 4 weeks ago by
natasha.sernova • 3.6k
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