User: natasha.sernova

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natasha.sernova3.0k
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Posts by natasha.sernova

<prev • 722 results • page 1 of 73 • next >
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Comment: C: Postdoctoral position in evolutionary bioinformatics in Switzerland
... Dear Professor Dessimoz, The URL you provided doesn't work. ...
written 11 days ago by natasha.sernova3.0k
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Comment: C: convert gene IDs of Ovis aries genes to human orthologue Ensembl gene IDs in Bio
... See the following post. it looks helpful. https://www.biostars.org/p/52173/ ...
written 15 days ago by natasha.sernova3.0k
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Answer: A: question about protein GPI anchor site prediction
... Many years ago it was a topic of my work in Swiss-Prot. Hopefully it may be helpful. http://www.mpb.unige.ch/reports/rep_Natalia_Sernova.pdf ...
written 18 days ago by natasha.sernova3.0k
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Comment: C: Is there any software to predict protein expression value?
... See these two links: https://www.researchgate.net/post/Is_there_any_software_to_predict_protein_expression_value See Daniel answer there - translation initiation rate https://salislab.net/software/reverse https://academic.oup.com/bioinformatics/article/25/17/2200/211163 These people estimated p ...
written 18 days ago by natasha.sernova3.0k
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Comment: C: How to convert fasta file format to phylip file format
... I use different tools to build phylogenetic trees. But I also need to convert fasta to phylip. To convert fasta to phylip: http://sequenceconversion.bugaco.com/converter/biology/sequences/fasta_to_phylip.php A program for phylogenetic trees: http://www.atgc-montpellier.fr/phyml/ Other useful prog ...
written 4 weeks ago by natasha.sernova3.0k
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Comment: C: Extract viral genome features
... These posts look useful, although VIGOR link doesn’t work for me. https://www.biostars.org/p/1586/ https://www.biostars.org/p/216892/ ...
written 5 weeks ago by natasha.sernova3.0k
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Comment: C: How to search for TF binding sites upstream of specific genes?
... I’ve found several posts about it. Some of them look useful. https://www.biostars.org/p/6415/ https://www.biostars.org/p/102525/ https://www.biostars.org/p/196789/ https://www.biostars.org/p/313163/ https://www.biostars.org/p/254487/ ...
written 5 weeks ago by natasha.sernova3.0k
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Comment: C: Getting genomic regions by local coordinates (protein/transcript)
... Maybe something like that will be helpful? Mapping between genome, transcript and protein coordinates https://bioconductor.org/packages/devel/bioc/vignettes/ensembldb/inst/doc/coordinate-mapping.html ...
written 5 weeks ago by natasha.sernova3.0k
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Comment: C: identity, positivity and similarity in blastp results
... See this post, the book from Damian advice looks helpful. https://www.biostars.org/p/152982/ ...
written 6 weeks ago by natasha.sernova3.0k
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Comment: C: Comparing time series expression data
... I’ve just asked a fragment of your question in google. ‘comparing two time series gene expression studies’ It gave a lot of omics-tools and other links, for example: Time-course data analysis software tools https://omictools.com/time-course-category A PNAS paper that looks interesting. http:// ...
written 10 weeks ago by natasha.sernova3.0k

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Teacher 3 days ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 3 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 4 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 5 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 5 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 13 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Scholar 14 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Popular Question 14 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Epic Question 17 months ago, created a question with more than 10,000 views. For how to convert a long fasta-file into many separate single fasta sequences
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Scholar 20 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Popular Question 21 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 21 months ago, created a question with more than 1,000 views. For vcf to MAF to fasta
Popular Question 21 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Scholar 21 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Appreciated 21 months ago, created a post with more than 5 votes. For how to convert a long fasta-file into many separate single fasta sequences
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: How to find a conserved regions for a protein by phylogentic analysis tree
Student 23 months ago, asked a question with at least 3 up-votes. For how to convert a long fasta-file into many separate single fasta sequences
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)

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