User: natasha.sernova

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natasha.sernova3.2k
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Posts by natasha.sernova

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Comment: C: How to do a phylogenetic tree?
... phylogenetic tree from contigs - this is your question What 5 diferent species do you study? Since it was not clear, I found at least something in Biostars: See these posts and links: For bacteria: https://www.biostars.org/p/81620/ for others: https://www.biostars.org/p/223181/ to assemble ...
written 20 hours ago by natasha.sernova3.2k
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Comment: C: Medical terms Synonyms
... See this article. The Unified Medical Language System (UMLS): integrating biomedical terminology Olivier Bodenreider https://academic.oup.com/nar/article/32/suppl_1/D267/2505235 It's from 2004, but a lot of people have cited it - there should be links to some updates if needed. See their websit ...
written 1 day ago by natasha.sernova3.2k
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Comment: C: Phosphorylation status database
... Prokaryotic db: http://dbpsp.biocuckoo.org/ Human medical db: http://phossnp.biocuckoo.org/ The article: A Summary of Computational Resources for Protein Phosphorylation http://www.biocuckoo.org/pub/CPPS.pdf Plant phosphorylation db: http://p3db.org/ A biostars post: https://www.biostars.org/p/ ...
written 2 days ago by natasha.sernova3.2k
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Comment: C: Subset of samples from a large hap map dataset
... There is a lot of information in Biostars on hapmap. Just go to the left upper corner of the page, select LATEST and insert 'hapmap and SNP', for example. to the empty string in the middle. You will see a lot of posts. Also see the right panel - there are a lot there as well. I've taken one as e ...
written 2 days ago by natasha.sernova3.2k
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Comment: C: How to get full list of human Protein Kinases and Kinase Inhibitors?
... I hope this link to Science article may help: https://www.researchgate.net/publication/11001030_The_Protein_Kinase_Complement_of_the_Human_Genome http://science.sciencemag.org/content/298/5600/191 the article itself Below there are 2 publications about many kinase inhibitors, including human on ...
written 4 days ago by natasha.sernova3.2k
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Comment: A: Find mapping of indices of amino acid index in PDB files and sequence
... There was a post several weeks ago. It may be useful to you. https://www.biostars.org/p/348027/ ...
written 5 days ago by natasha.sernova3.2k
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Comment: C: Protist in UniProt/NCBI taxonomic tree
... Try this link: http://www.phytopathdb.org/pathogens_eg They have some Protist genomes: http://www.phytopathdb.org/content/albugo-candida http://www.phytopathdb.org/content/albugo-laibachii http://www.phytopathdb.org/content/hyaloperonospora-arabidopsidis http://www.phytopathdb.org/content/phyto ...
written 6 days ago by natasha.sernova3.2k
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Comment: C: Where can I obtain Transposable elements of Zebra fish (Danio)
... There are some article links from NCBI and other sources: Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio). https://onlinelibrary.wiley.com/doi/abs/10.1111/jeu.12331 Ndikumana S et al. J Eukaryot Microbiol. (2017) Gal4 Driver Transgenic Zebrafish: ...
written 8 days ago by natasha.sernova3.2k
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Comment: C: cellular countermeasures in cells against mutations
... Sure, I've removed it. Thank you! ...
written 18 days ago by natasha.sernova3.2k
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Answer: C: cellular countermeasures in cells against mutations
... See this link for human cells: https://www.quora.com/How-can-human-cells-protect-themselves-from-mutations See also this post: https://www.biostars.org/p/158221/ There is an article from 2009: Rate, molecular spectrum, and consequences of human mutation Michael Lynch https://www.pnas.org/cont ...
written 18 days ago by natasha.sernova3.2k

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Autobiographer 9 days ago, has more than 80 characters in the information field of the user's profile.
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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Teacher 3 months ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Scholar 3 months ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Scholar 3 months ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 5 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 6 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 7 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 8 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 9 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 9 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
Popular Question 16 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 18 months ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Scholar 18 months ago, created an answer that has been accepted. For A: dN/dS ratio (omega)
Epic Question 21 months ago, created a question with more than 10,000 views. For how to convert a long fasta-file into many separate single fasta sequences
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: dN/dS ratio (omega)
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Popular Question 2.1 years ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Popular Question 2.1 years ago, created a question with more than 1,000 views. For vcf to MAF to fasta

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