User: natasha.sernova

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natasha.sernova3.8k
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Posts by natasha.sernova

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Comment: C: Ortholog Protein Finding Tool
... Dear Sir! I tried to enter — I received 404-error — no requested file. Natasha Sernova ...
written 20 days ago by natasha.sernova3.8k
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Comment: C: Ortholog Protein Finding Tool
... When I pressed the link, I received 404-error - no requested file. ...
written 20 days ago by natasha.sernova3.8k
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Comment: C: align 230-ribonucleotide fragment 100 times
... I found one probable answer by myself. https://www.biostars.org/p/400256/ and the tool is RNAFold But I was looking for a tool to align Stockholm-format fragments... Then I found another tool: https://www.biostars.org/p/335675/ ...
written 5 weeks ago by natasha.sernova3.8k
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align 230-ribonucleotide fragment 100 times
... Dear all, I have to align 230-ribonucleotide fragment many times (100) to a single reference. Unfortunately there are 80 symbols in any single line. What tool may I use to do it? Is it possible to make it nice somehow? There was a post about that a long time ago, but I lost its number. Thank you ver ...
a long nucleotide fragment alignment tool written 7 weeks ago by natasha.sernova3.8k • updated 3 days ago by Biostar ♦♦ 20
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Comment: C: The SARS-CoV-2 genome alignment option
... Unfortunately some genomes are elsewhere, I had to search other dbs to find most of them. ...
written 8 months ago by natasha.sernova3.8k
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The SARS-CoV-2 genome alignment option
... Dear all, Nowadays many scientists have to solve some problems related to SARS-CoV-2. The viral genomes are huge(~30kb). Is it correct, that to align several of them I have to put those fasta-genomes to a single file, add a reference genome to the same file and run a proper tool like MAFFT? (lik ...
mafft mafft-l-ins-i sars-cov-2 written 8 months ago by natasha.sernova3.8k
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Comment: A: Predicting the 3D structure of a protein
... According to this page: https://blanco.biomol.uci.edu/mpex/ it may be used. ...
written 9 months ago by natasha.sernova3.8k
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Comment: C: designing PCR for COVID19
... IMHO it is an important topic. Any country has at least a few patients now. And very few articles discuss experimental procedures and provide some details. Where else is it possible to find some current scientific information, if not here? Thank you! ...
written 10 months ago by natasha.sernova3.8k
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Comment: C: Maf to Fasta
... The following post may be helpful: https://www.biostars.org/p/386058/ Look at the right panel after you have submitted your question. You will see a lot of similar questions! ...
written 12 months ago by natasha.sernova3.8k
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Comment: A: GENCODE and untranslated regions
... This post looks helpful. https://www.biostars.org/p/48502/ ...
written 13 months ago by natasha.sernova3.8k

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Popular Question 20 days ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Prophet 12 weeks ago, created a post with more than 20 followers. For how to convert a long fasta-file into many separate single fasta sequences
Great Question 11 months ago, created a question with more than 5,000 views. For an equivalent python statement for perl's "next"-statement
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Scholar 14 months ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 14 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 15 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Scholar 16 months ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 19 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Popular Question 19 months ago, created a question with more than 1,000 views. For Prokaryotic nucleotide (gi-number OR ID) database
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Popular Question 20 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Popular Question 20 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Popular Question 21 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Popular Question 22 months ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Great Question 22 months ago, created a question with more than 5,000 views. For GATK: vcf to fasta
Appreciated 22 months ago, created a post with more than 5 votes. For how to convert a long fasta-file into many separate single fasta sequences
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: where can I get environmental bacteria genome in fasta format (as many as possib
Autobiographer 2.0 years ago, has more than 80 characters in the information field of the user's profile.
Popular Question 2.2 years ago, created a question with more than 1,000 views. For How To Split Hhm_Db Into Hhm-Files?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Tools to find the unique proteins (without orthologs) in a bacterial taxon
Scholar 2.3 years ago, created an answer that has been accepted. For A: where can I get environmental bacteria genome in fasta format (as many as possib

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