User: natasha.sernova
natasha.sernova • 3.0k
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Posts by natasha.sernova
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... Dear Professor Dessimoz,
The URL you provided doesn't work. ...
written 11 days ago by
natasha.sernova • 3.0k
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... See the following post. it looks helpful.
https://www.biostars.org/p/52173/ ...
written 15 days ago by
natasha.sernova • 3.0k
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... Many years ago it was a topic of my work in Swiss-Prot.
Hopefully it may be helpful.
http://www.mpb.unige.ch/reports/rep_Natalia_Sernova.pdf ...
written 18 days ago by
natasha.sernova • 3.0k
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... See these two links:
https://www.researchgate.net/post/Is_there_any_software_to_predict_protein_expression_value
See Daniel answer there - translation initiation rate
https://salislab.net/software/reverse
https://academic.oup.com/bioinformatics/article/25/17/2200/211163
These people estimated p ...
written 18 days ago by
natasha.sernova • 3.0k
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... I use different tools to build phylogenetic trees. But I also need to convert fasta to phylip.
To convert fasta to phylip:
http://sequenceconversion.bugaco.com/converter/biology/sequences/fasta_to_phylip.php
A program for phylogenetic trees:
http://www.atgc-montpellier.fr/phyml/
Other useful prog ...
written 4 weeks ago by
natasha.sernova • 3.0k
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Comment:
C: Extract viral genome features
... These posts look useful, although VIGOR link doesn’t work for me.
https://www.biostars.org/p/1586/
https://www.biostars.org/p/216892/
...
written 5 weeks ago by
natasha.sernova • 3.0k
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... I’ve found several posts about it. Some of them look useful.
https://www.biostars.org/p/6415/
https://www.biostars.org/p/102525/
https://www.biostars.org/p/196789/
https://www.biostars.org/p/313163/
https://www.biostars.org/p/254487/
...
written 5 weeks ago by
natasha.sernova • 3.0k
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... Maybe something like that will be helpful?
Mapping between genome, transcript and protein coordinates
https://bioconductor.org/packages/devel/bioc/vignettes/ensembldb/inst/doc/coordinate-mapping.html ...
written 5 weeks ago by
natasha.sernova • 3.0k
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... See this post, the book from Damian advice looks helpful.
https://www.biostars.org/p/152982/
...
written 6 weeks ago by
natasha.sernova • 3.0k
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... I’ve just asked a fragment of your question in google.
‘comparing two time series gene expression studies’
It gave a lot of omics-tools and other links, for example:
Time-course data analysis software tools
https://omictools.com/time-course-category
A PNAS paper that looks interesting.
http:// ...
written 10 weeks ago by
natasha.sernova • 3.0k
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For A: where can I get environmental bacteria genome in fasta format (as many as possib
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For A: where can I get environmental bacteria genome in fasta format (as many as possib
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For how to find and replace the atypical aas in a protein fasta-file, remembering their protein position
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For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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For Tools to find the unique proteins (without orthologs) in a bacterial taxon
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For how to convert a long fasta-file into many separate single fasta sequences
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For vcf to MAF to fasta
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