User: Hranjeev

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Hranjeev1.5k
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Posts by Hranjeev

<prev • 99 results • page 1 of 10 • next >
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Comment: C: EPACTS association analysis
... Duplicate of https://www.biostars.org/p/117810/ ...
written 17 months ago by Hranjeev1.5k
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Comment: C: If you only have diploid reference genome, how can you properly assemble a haplo
... *edited* for clarity. ...
written 18 months ago by Hranjeev1.5k
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Comment: C: Atlas: A framework for downloading, importing, viewing, and simulating genes
... Thanks for sharing! Seems like the project can be expanded further in many useful directions. Genome browser in C#? ...
written 18 months ago by Hranjeev1.5k
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If you only have diploid reference genome, how can you properly assemble a haploid genome?
... Can I not assemble a haploid genome using a diploid as a reference. Should I or should I not? Is it acceptable to perform mapping based assembly of a haploid using the diploid as reference? Instead, do you start assembling using a *de novo* strategy? ...
de novo assembly reference-based written 19 months ago by Hranjeev1.5k
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Comment: C: how to calculaute Tissue Specificity of genes
... Try Jaccard index, I have used them with RNAseq data before. ...
written 2.9 years ago by Hranjeev1.5k
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Comment: C: Custom searches on Biostars?
... the laziest way to do this is of course rather than live search being global in every section, it should give results pertaining to that section ;-) ...
written 2.9 years ago by Hranjeev1.5k
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Forum: Custom searches on Biostars?
... Hi everyone, Good day! I think Biostars needs options to custom search based on sections etc or narrow by tags. I am not aware of such a function here. Yes, I have tried site:https://www.biostars.org/t/***Section*** "keywords" on google and it somewhat helps. But, need it to be easy like the liv ...
search forum tags custom options written 2.9 years ago by Hranjeev1.5k • updated 2.3 years ago by Michael Dondrup46k
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Comment: C: Review of the EVAL package (generating stats for GTF files)
... Useful! ...so that I don't fall into wasting time on it. ...
written 3.3 years ago by Hranjeev1.5k
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Answer: A: Using Sequin, cannot put in protein translation exception.
... You've got to key in the amino acid number after setting a 3' coordinate on the Location tab (update your coordinate accordingly to consider the TA overhang). Your amino acid number will usually be total AA_length + 1. And, sequin will calculate the exception position for you. ...
written 4.0 years ago by Hranjeev1.5k
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Answer: A: Criteria for identifying tandem and segmental duplicates
... The typical criteria that defines a segmental duplication is that the sequence is at least 1kb and 90% identical to the duplicate. ...
written 4.1 years ago by Hranjeev1.5k

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