User: sci

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sci0
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Getting coverage per barcode from bamfile with barcoded reads
... Hi, I'd like to do the following with a huge bam file, reads are randomly barcoded: 1. Take all reads associated with barcode (DONE) 2. If possible build a fragment using reads mapped within say 100kb of each other (DONE) 3. Find coverage for this barcode in each assembled "fragment" - obviously ...
coverage samtools bam barcode bedtools written 3.3 years ago by sci0 • updated 3.1 years ago by James Ashmore2.5k

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