User: Christophe Dessimoz

Reputation:
650
Status:
Trusted
Location:
University College London
Website:
http://lab.dessimoz.org/
Twitter:
cdessimoz
Scholar ID:
Google Scholar Page
Last seen:
1 day, 4 hours ago
Joined:
6 years, 4 months ago
Email:
c*********@ucl.ac.uk

Posts by Christophe Dessimoz

<prev • 46 results • page 1 of 5 • next >
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Job: Postdoc position in computational biology, Dessimoz Lab, University of Lausanne & SIB
... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
postdoc jobs switzerland job written 4 days ago by Christophe Dessimoz650
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Answer: A: Cannonical human sequence missing in OMA database?
... The reason for this is that OMA is quite stringent when mapping IDs. For human, OMA uses the genome provided by Ensembl. The protein sequence we consider for the gene you are interested in (human gene "GABRA2") is a different isoform in OMA vs UniProt. The one we use in OMA (https://omabrowser.org/o ...
written 4 months ago by Christophe Dessimoz650
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Answer: A: Finding orthologs in a organism with a genome duplication.
... You can use OMA for this. If your genomes are in OMA, you can use the pairwise orthology function (https://omabrowser.org/oma/genomePW/). In your case, since Xenopus Laevis is not yet in OMA, you could use [OMA standalone](http://omabrowser.org/standalone), which will produce pairwise ortholog file ...
written 6 months ago by Christophe Dessimoz650 • updated 6 months ago by RamRS26k
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Job: 15 PhD positions in Quantitative Biology, Lausanne, Switzerland
... 15 Fully funded PhD studentships in Quantitative Biology ======================================================== ![flyer][1] The advent of large-throughput data is transforming life sciences into an increasingly quantitative discipline. The University of Lausanne (Switzerland) is at the forefront ...
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Job: Two postdoc positions in comparative evolutionary genomics (Lausanne, Switzerland)
... Two postdoc positions in comparative evolutionary genomics - Expected start date: as soon as possible - Contract length: 1 year, renewable once for 2 years - Activity rate: 100% - Workplace: University of Lausanne, Génopode, 1015 Lausanne The groups of Profs Christophe Dessimoz and Robert Wat ...
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Job: Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
... Postdoctoral associate in evolutionary computational biology ==== * Expected start date: 01.09.2019 or to be agreed * Contract length: 1 year, renewable 2 x 2 years, up to 5 years * Activity rate: 100% * Workplace: University of Lausanne, Génopode, 1015 Lausanne **The opportunity** The Dessimoz L ...
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Answer: A: OMA error - download from gene ontology not working 404
... OMA standalone relies on the shell utility "mktemp", which should create a temporary file that is writable for the process, but somehow this seems to be failing in your system. This might have to do with how your job scheduler is configured on your cluster. Could you try to run a simple script whic ...
written 13 months ago by Christophe Dessimoz650
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Answer: A: OMA error - download from gene ontology not working 404
... Thanks for reporting this problem. It indeed appears that the Gene Ontology consortium website was recently updated and the URL has changed. We will fix this and do a new release soon. Meanwhile, if you (or anyone else) is affected, here is a fix: Locate the "darwinlib" directory. If you are runnin ...
written 13 months ago by Christophe Dessimoz650
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Answer: A: Getting the highest taxonomy in the HOG database for a given OMA gene id
... There are several options. One way is to use the REST API. If you use e.g. P53_RAT as an input sequence: https://omabrowser.org/api/hog/P53_RAT/?level=root You can see that the level is Chordata (in the current Dec 2018 release). If you use Python, you can use the omadb package $ pip ins ...
written 13 months ago by Christophe Dessimoz650
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Comment: C: Use OrthoDB to retrieve the orthologs between human and bacteria
... https://omabrowser.org/oma/release/ ...
written 14 months ago by Christophe Dessimoz650

Latest awards to Christophe Dessimoz

Appreciated 4 months ago, created a post with more than 5 votes. For A: Cannonical human sequence missing in OMA database?
Scholar 4 months ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Supporter 13 months ago, voted at least 25 times.
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 20 months ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 3.0 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Scholar 3.0 years ago, created an answer that has been accepted. For A: Can OMA calculate orthologs for single query sequence?
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Appreciated 3.3 years ago, created a post with more than 5 votes. For The Gene Ontology Handbook (open access)
Scholar 4.2 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Popular Question 4.3 years ago, created a question with more than 1,000 views. For (Senior) Research Associate In Bioinformatics And Comparative Genomics At Ucl, London
Scholar 4.3 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 4.4 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone

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