User: Christophe Dessimoz
Christophe Dessimoz • 540
- Reputation:
- 540
- Status:
- Trusted
- Location:
- University College London
- Website:
- http://lab.dessimoz.org/
- Twitter:
- cdessimoz
- Scholar ID:
- Google Scholar Page
- Last seen:
- 5 days, 12 hours ago
- Joined:
- 5 years, 7 months ago
- Email:
- c*********@ucl.ac.uk
Posts by Christophe Dessimoz
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... Two postdoc positions in comparative evolutionary genomics
- Expected start date: as soon as possible
- Contract length: 1 year, renewable once for 2 years
- Activity rate: 100%
- Workplace: University of Lausanne, Génopode, 1015 Lausanne
The groups of Profs Christophe Dessimoz and Robert Wat ...
written 13 days ago by
Christophe Dessimoz • 540
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Job:
Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
... Postdoctoral associate in evolutionary computational biology
====
* Expected start date: 01.09.2019 or to be agreed
* Contract length: 1 year, renewable 2 x 2 years, up to 5 years
* Activity rate: 100%
* Workplace: University of Lausanne, Génopode, 1015 Lausanne
**The opportunity**
The Dessimoz L ...
written 11 weeks ago by
Christophe Dessimoz • 540
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... OMA standalone relies on the shell utility "mktemp", which should create a temporary file that is writable for the process, but somehow this seems to be failing in your system. This might have to do with how your job scheduler is configured on your cluster.
Could you try to run a simple script whic ...
written 3 months ago by
Christophe Dessimoz • 540
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... Thanks for reporting this problem. It indeed appears that the Gene Ontology consortium website was recently updated and the URL has changed. We will fix this and do a new release soon. Meanwhile, if you (or anyone else) is affected, here is a fix:
Locate the "darwinlib" directory. If you are runnin ...
written 3 months ago by
Christophe Dessimoz • 540
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... There are several options. One way is to use the REST API. If you use e.g. P53_RAT as an input sequence:
https://omabrowser.org/api/hog/P53_RAT/?level=root
You can see that the level is Chordata (in the current Dec 2018 release).
If you use Python, you can use the omadb package
$ pip ins ...
written 3 months ago by
Christophe Dessimoz • 540
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... https://omabrowser.org/oma/release/ ...
written 4 months ago by
Christophe Dessimoz • 540
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... The documentation of pyHam can be accessed here: https://github.com/DessimozLab/pyham
There is a tutorial here: http://lab.dessimoz.org/blog/2017/06/29/pyham
Finally, there is now an Application Note introducing the package here: https://doi.org/10.1093/bioinformatics/bty994 ...
written 6 months ago by
Christophe Dessimoz • 540
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... You can use OMA (http://omabrowser.org) to retrieve orthologs between human and bacteria (or indeed across domains of life in general. ...
written 8 months ago by
Christophe Dessimoz • 540
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... Postdoctoral position in evolutionary bioinformatics
===========
University of Lausanne & Swiss Institute of Bioinformatics
*Start date:* 01.11.2018 (or as soon as possible thereafter)
*Contract:* 1 year, renewable 2 x 2 years, maximum 5 years
*Activity rate:* 100%
The research grou ...
written 9 months ago by
Christophe Dessimoz • 540
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... Ahhh adrian.altenhoff beat me to it! ...
written 10 months ago by
Christophe Dessimoz • 540
Latest awards to Christophe Dessimoz
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For Postdoctoral associate in Evolution And Function of lncRNA - University of Lausanne & Swiss Institute of Bioinformatics, Switzerland
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Supporter
3 months ago,
voted at least 25 times.
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Scholar
10 months ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
10 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Over 10 computational biology PhD and postdoc positions in Lausanne, London. Stockholm & Ghent (updated)
Scholar
2.2 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Scholar
2.2 years ago,
created an answer that has been accepted.
For A: Can OMA calculate orthologs for single query sequence?
Teacher
2.2 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Appreciated
2.5 years ago,
created a post with more than 5 votes.
For The Gene Ontology Handbook (open access)
Scholar
3.4 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For (Senior) Research Associate In Bioinformatics And Comparative Genomics At Ucl, London
Scholar
3.5 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
3.5 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
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3.6 years ago,
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For A: Details of OMA Running Process - OMA standalone
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3.6 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
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