User: Christophe Dessimoz
Christophe Dessimoz • 670
- Reputation:
- 670
- Status:
- Trusted
- Location:
- University College London
- Website:
- http://lab.dessimoz.org/
- Twitter:
- cdessimoz
- Scholar ID:
- Google Scholar Page
- Last seen:
- 4 weeks ago
- Joined:
- 6 years, 9 months ago
- Email:
- c*********@ucl.ac.uk
Posts by Christophe Dessimoz
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... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
written 4 weeks ago by
Christophe Dessimoz • 670
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... Hello Biostars community,
We are delighted to announce our OMA Corona Browser instance, which comprises 119 Nidovirales species. This encompasses the human SARS viruses, but also other coronaviruses and other single-stranded RNA viruses. Some of these viruses affect humans, while others affect bats ...
written 8 weeks ago by
Christophe Dessimoz • 670
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... Not currently. But we have in the meantime released packages for Python and R, which should make it even more easy to perform the kind of specific search you seem to be looking to do:
[https://f1000research.com/articles/8-42][1]
[1]: https://f1000research.com/articles/8-42 ...
written 3 months ago by
Christophe Dessimoz • 670
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... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
written 4 months ago by
Christophe Dessimoz • 670
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... The reason for this is that OMA is quite stringent when mapping IDs. For human, OMA uses the genome provided by Ensembl. The protein sequence we consider for the gene you are interested in (human gene "GABRA2") is a different isoform in OMA vs UniProt. The one we use in OMA (https://omabrowser.org/o ...
written 8 months ago by
Christophe Dessimoz • 670
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... You can use OMA for this. If your genomes are in OMA, you can use the pairwise orthology function (https://omabrowser.org/oma/genomePW/).
In your case, since Xenopus Laevis is not yet in OMA, you could use [OMA standalone](http://omabrowser.org/standalone), which will produce pairwise ortholog file ...
written 11 months ago by
Christophe Dessimoz • 670
• updated
11 months ago by
RamRS ♦ 28k
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... 15 Fully funded PhD studentships in Quantitative Biology
========================================================
![flyer][1]
The advent of large-throughput data is transforming life sciences into an increasingly quantitative discipline. The University of Lausanne (Switzerland) is at the forefront ...
written 11 months ago by
Christophe Dessimoz • 670
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... Two postdoc positions in comparative evolutionary genomics
- Expected start date: as soon as possible
- Contract length: 1 year, renewable once for 2 years
- Activity rate: 100%
- Workplace: University of Lausanne, Génopode, 1015 Lausanne
The groups of Profs Christophe Dessimoz and Robert Wat ...
written 14 months ago by
Christophe Dessimoz • 670
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Job:
Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
... Postdoctoral associate in evolutionary computational biology
====
* Expected start date: 01.09.2019 or to be agreed
* Contract length: 1 year, renewable 2 x 2 years, up to 5 years
* Activity rate: 100%
* Workplace: University of Lausanne, Génopode, 1015 Lausanne
**The opportunity**
The Dessimoz L ...
written 16 months ago by
Christophe Dessimoz • 670
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... OMA standalone relies on the shell utility "mktemp", which should create a temporary file that is writable for the process, but somehow this seems to be failing in your system. This might have to do with how your job scheduler is configured on your cluster.
Could you try to run a simple script whic ...
written 17 months ago by
Christophe Dessimoz • 670
Latest awards to Christophe Dessimoz
Appreciated
8 months ago,
created a post with more than 5 votes.
For A: Cannonical human sequence missing in OMA database?
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate in Evolution And Function of lncRNA - University of Lausanne & Swiss Institute of Bioinformatics, Switzerland
Scholar
8 months ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Teacher
11 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate in Evolution And Function of lncRNA - University of Lausanne & Swiss Institute of Bioinformatics, Switzerland
Popular Question
17 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Supporter
18 months ago,
voted at least 25 times.
Teacher
18 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
19 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Scholar
2.0 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
2.0 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Over 10 computational biology PhD and postdoc positions in Lausanne, London. Stockholm & Ghent (updated)
Scholar
3.4 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Scholar
3.4 years ago,
created an answer that has been accepted.
For A: Can OMA calculate orthologs for single query sequence?
Teacher
3.4 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Appreciated
3.6 years ago,
created a post with more than 5 votes.
For The Gene Ontology Handbook (open access)
Scholar
4.5 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Popular Question
4.7 years ago,
created a question with more than 1,000 views.
For (Senior) Research Associate In Bioinformatics And Comparative Genomics At Ucl, London
Scholar
4.7 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
4.7 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
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4.8 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
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4.8 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
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