User: Christophe Dessimoz

Reputation:
670
Status:
Trusted
Location:
University College London
Website:
http://lab.dessimoz.org/
Twitter:
cdessimoz
Scholar ID:
Google Scholar Page
Last seen:
4 weeks ago
Joined:
6 years, 9 months ago
Email:
c*********@ucl.ac.uk

Posts by Christophe Dessimoz

<prev • 49 results • page 1 of 5 • next >
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Job: Open computational biology postdoc position in Dessimoz Lab, Lausanne, Switzerland
... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
postdoc jobs job written 4 weeks ago by Christophe Dessimoz670
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Tool: Corona OMA Browser: orthologs among corona viruses including SARS-COV-1 and SARS-COV-2
... Hello Biostars community, We are delighted to announce our OMA Corona Browser instance, which comprises 119 Nidovirales species. This encompasses the human SARS viruses, but also other coronaviruses and other single-stranded RNA viruses. Some of these viruses affect humans, while others affect bats ...
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Comment: C: OMA - How to retrieve orthologs of only one representative of each taxonomy rank
... Not currently. But we have in the meantime released packages for Python and R, which should make it even more easy to perform the kind of specific search you seem to be looking to do: [https://f1000research.com/articles/8-42][1] [1]: https://f1000research.com/articles/8-42 ...
written 3 months ago by Christophe Dessimoz670
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Job: Postdoc position in computational biology, Dessimoz Lab, University of Lausanne & SIB
... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
postdoc jobs switzerland job written 4 months ago by Christophe Dessimoz670
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Answer: A: Cannonical human sequence missing in OMA database?
... The reason for this is that OMA is quite stringent when mapping IDs. For human, OMA uses the genome provided by Ensembl. The protein sequence we consider for the gene you are interested in (human gene "GABRA2") is a different isoform in OMA vs UniProt. The one we use in OMA (https://omabrowser.org/o ...
written 8 months ago by Christophe Dessimoz670
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Answer: A: Finding orthologs in a organism with a genome duplication.
... You can use OMA for this. If your genomes are in OMA, you can use the pairwise orthology function (https://omabrowser.org/oma/genomePW/). In your case, since Xenopus Laevis is not yet in OMA, you could use [OMA standalone](http://omabrowser.org/standalone), which will produce pairwise ortholog file ...
written 11 months ago by Christophe Dessimoz670 • updated 11 months ago by RamRS28k
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Job: 15 PhD positions in Quantitative Biology, Lausanne, Switzerland
... 15 Fully funded PhD studentships in Quantitative Biology ======================================================== ![flyer][1] The advent of large-throughput data is transforming life sciences into an increasingly quantitative discipline. The University of Lausanne (Switzerland) is at the forefront ...
quantitative biology jobs phd switzerland job written 11 months ago by Christophe Dessimoz670
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Job: Two postdoc positions in comparative evolutionary genomics (Lausanne, Switzerland)
... Two postdoc positions in comparative evolutionary genomics - Expected start date: as soon as possible - Contract length: 1 year, renewable once for 2 years - Activity rate: 100% - Workplace: University of Lausanne, Génopode, 1015 Lausanne The groups of Profs Christophe Dessimoz and Robert Wat ...
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Job: Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
... Postdoctoral associate in evolutionary computational biology ==== * Expected start date: 01.09.2019 or to be agreed * Contract length: 1 year, renewable 2 x 2 years, up to 5 years * Activity rate: 100% * Workplace: University of Lausanne, Génopode, 1015 Lausanne **The opportunity** The Dessimoz L ...
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Answer: A: OMA error - download from gene ontology not working 404
... OMA standalone relies on the shell utility "mktemp", which should create a temporary file that is writable for the process, but somehow this seems to be failing in your system. This might have to do with how your job scheduler is configured on your cluster. Could you try to run a simple script whic ...
written 17 months ago by Christophe Dessimoz670

Latest awards to Christophe Dessimoz

Appreciated 8 months ago, created a post with more than 5 votes. For A: Cannonical human sequence missing in OMA database?
Scholar 8 months ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Supporter 18 months ago, voted at least 25 times.
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 2.0 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 3.4 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Scholar 3.4 years ago, created an answer that has been accepted. For A: Can OMA calculate orthologs for single query sequence?
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Appreciated 3.6 years ago, created a post with more than 5 votes. For The Gene Ontology Handbook (open access)
Scholar 4.5 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Popular Question 4.7 years ago, created a question with more than 1,000 views. For (Senior) Research Associate In Bioinformatics And Comparative Genomics At Ucl, London
Scholar 4.7 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 4.7 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone
Scholar 4.8 years ago, created an answer that has been accepted. For A: Details of OMA Running Process - OMA standalone
Teacher 4.8 years ago, created an answer with at least 3 up-votes. For A: Details of OMA Running Process - OMA standalone

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