User: Christophe Dessimoz
Christophe Dessimoz • 650
- Reputation:
- 650
- Status:
- Trusted
- Location:
- University College London
- Website:
- http://lab.dessimoz.org/
- Twitter:
- cdessimoz
- Scholar ID:
- Google Scholar Page
- Last seen:
- 1 day, 4 hours ago
- Joined:
- 6 years, 4 months ago
- Email:
- c*********@ucl.ac.uk
Posts by Christophe Dessimoz
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... The group of Prof Christophe Dessimoz is seeking candidates for a Postdoctoral (Premier Assistant) position at the Departments of Computational Biology, University of Lausanne, Switzerland. Working at the interface between biology and computer science, the Dessimoz Lab ([https://lab.dessimoz.org/][1 ...
written 4 days ago by
Christophe Dessimoz • 650
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... The reason for this is that OMA is quite stringent when mapping IDs. For human, OMA uses the genome provided by Ensembl. The protein sequence we consider for the gene you are interested in (human gene "GABRA2") is a different isoform in OMA vs UniProt. The one we use in OMA (https://omabrowser.org/o ...
written 4 months ago by
Christophe Dessimoz • 650
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... You can use OMA for this. If your genomes are in OMA, you can use the pairwise orthology function (https://omabrowser.org/oma/genomePW/).
In your case, since Xenopus Laevis is not yet in OMA, you could use [OMA standalone](http://omabrowser.org/standalone), which will produce pairwise ortholog file ...
written 6 months ago by
Christophe Dessimoz • 650
• updated
6 months ago by
RamRS ♦ 26k
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... 15 Fully funded PhD studentships in Quantitative Biology
========================================================
![flyer][1]
The advent of large-throughput data is transforming life sciences into an increasingly quantitative discipline. The University of Lausanne (Switzerland) is at the forefront ...
written 6 months ago by
Christophe Dessimoz • 650
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... Two postdoc positions in comparative evolutionary genomics
- Expected start date: as soon as possible
- Contract length: 1 year, renewable once for 2 years
- Activity rate: 100%
- Workplace: University of Lausanne, Génopode, 1015 Lausanne
The groups of Profs Christophe Dessimoz and Robert Wat ...
written 10 months ago by
Christophe Dessimoz • 650
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Job:
Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
... Postdoctoral associate in evolutionary computational biology
====
* Expected start date: 01.09.2019 or to be agreed
* Contract length: 1 year, renewable 2 x 2 years, up to 5 years
* Activity rate: 100%
* Workplace: University of Lausanne, Génopode, 1015 Lausanne
**The opportunity**
The Dessimoz L ...
written 12 months ago by
Christophe Dessimoz • 650
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... OMA standalone relies on the shell utility "mktemp", which should create a temporary file that is writable for the process, but somehow this seems to be failing in your system. This might have to do with how your job scheduler is configured on your cluster.
Could you try to run a simple script whic ...
written 13 months ago by
Christophe Dessimoz • 650
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... Thanks for reporting this problem. It indeed appears that the Gene Ontology consortium website was recently updated and the URL has changed. We will fix this and do a new release soon. Meanwhile, if you (or anyone else) is affected, here is a fix:
Locate the "darwinlib" directory. If you are runnin ...
written 13 months ago by
Christophe Dessimoz • 650
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... There are several options. One way is to use the REST API. If you use e.g. P53_RAT as an input sequence:
https://omabrowser.org/api/hog/P53_RAT/?level=root
You can see that the level is Chordata (in the current Dec 2018 release).
If you use Python, you can use the omadb package
$ pip ins ...
written 13 months ago by
Christophe Dessimoz • 650
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... https://omabrowser.org/oma/release/ ...
written 14 months ago by
Christophe Dessimoz • 650
Latest awards to Christophe Dessimoz
Appreciated
4 months ago,
created a post with more than 5 votes.
For A: Cannonical human sequence missing in OMA database?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate in Evolution And Function of lncRNA - University of Lausanne & Swiss Institute of Bioinformatics, Switzerland
Scholar
4 months ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate in Evolution And Function of lncRNA - University of Lausanne & Swiss Institute of Bioinformatics, Switzerland
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Supporter
13 months ago,
voted at least 25 times.
Teacher
13 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
14 months ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Scholar
20 months ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
20 months ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Popular Question
2.4 years ago,
created a question with more than 1,000 views.
For Postdoctoral associate positions at the University of Lausanne, Switzerland (open call)
Popular Question
2.4 years ago,
created a question with more than 1,000 views.
For Over 10 computational biology PhD and postdoc positions in Lausanne, London. Stockholm & Ghent (updated)
Scholar
3.0 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Scholar
3.0 years ago,
created an answer that has been accepted.
For A: Can OMA calculate orthologs for single query sequence?
Teacher
3.0 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Appreciated
3.3 years ago,
created a post with more than 5 votes.
For The Gene Ontology Handbook (open access)
Scholar
4.2 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Popular Question
4.3 years ago,
created a question with more than 1,000 views.
For (Senior) Research Associate In Bioinformatics And Comparative Genomics At Ucl, London
Scholar
4.3 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
4.3 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
Scholar
4.4 years ago,
created an answer that has been accepted.
For A: Details of OMA Running Process - OMA standalone
Teacher
4.4 years ago,
created an answer with at least 3 up-votes.
For A: Details of OMA Running Process - OMA standalone
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