User: a1ultima
a1ultima • 750
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- Joined:
- 6 years, 7 months ago
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- a****@ic.ac.uk
“Team work makes the dream work”
Posts by a1ultima
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... Hi Assalm, I've only ever got it to work with pairs ...
written 2.6 years ago by
a1ultima • 750
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... Have a look at the bottom of the best answer on this biostars Q: https://www.biostars.org/p/5817/#234442 ...
written 3.3 years ago by
a1ultima • 750
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... Seems the gffread link is now broken, just a head's up ...
written 3.4 years ago by
a1ultima • 750
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... How about [this][1]?
But if you would prefer to see code (instead of math), then have a look at [changes.py][3] (Python code). But perhaps my documentation was not clear, so just ask me for clarification.
Or have a look at some of the links mentioned in a [related Biostars post][4].
If none of t ...
written 3.4 years ago by
a1ultima • 750
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... For all who have asked for the dN/dS Python file, it is finally on GitHub, I really do apologize for how long I have taken to get back to some of you. This Python file I am sharing is part of a bigger pipeline, but I hope I have documented it well enough now so that you can just take this part and p ...
written 3.4 years ago by
a1ultima • 750
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... I am really sorry about the embarassingly long wait before giving the R script for calculating error-bars for your dN/dS analyses.
For anybody who still needs it, I've put the script on GitHub with instructions on what you need to do to get it to work in the README.md:
[https://github.com/a1ultim ...
written 3.6 years ago by
a1ultima • 750
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... I have a list of odorant binding protein (OBP) IDs, from the malarial mosquito Anopheles gambiae, and I would like to know which ligands they bind to.
I would greatly appreciate tips or links to resources to help me identify which ligands these proteins bind to.
Here are the list of protein IDs: ...
written 4.6 years ago by
a1ultima • 750
2
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... Imagine there are two populations X and Y, and for each population you have the genotypes of each individual in that population (e.g. Aa, AA, aa, etc.), but for multiple loci (e.g. AABb).
How could one calculate the gene flow between population X and population Y?
An answer would ideally recommend ...
written 4.9 years ago by
a1ultima • 750
0
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3.1k
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... Yep here (sorry for the late reply):
https://github.com/biopython/biopython/issues/483
...
written 5.3 years ago by
a1ultima • 750
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... Perhaps Stack: Academia and/or Research Gate
...
written 5.4 years ago by
a1ultima • 750
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For Shannon entropy of a DNA motif?
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