Moderator: 5heikki
5heikki ♦ 8.3k
- Reputation:
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Posts by 5heikki
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... The answer you get is at most as good as the question you ask:
awk 'BEGIN{FS="\t";print 1.0"\n"0.9,1.0"\n"0.5,0.8,1.0}'
1
0.9 1
0.5 0.8 1
...
written 3 days ago by
5heikki ♦ 8.3k
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Comment:
C: centos and bowtie2
... It's not available in any CentOS 7 repo, thus you cannot install it with yum. Just follow the instructions at Bowtie2 github. If you don't understand what some term like $PATH means, then spend some time with google.. ...
written 4 days ago by
5heikki ♦ 8.3k
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... > the science of information interpretation
That's such a good way to put it. I might have to steal it for some slides. Although I think the stuff I do currently is more like information extraction :) ...
written 6 days ago by
5heikki ♦ 8.3k
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Comment:
C: Retrieving several bacteria CDS
... wget -i urls.txt
;) ...
written 6 days ago by
5heikki ♦ 8.3k
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Comment:
C: Retrieving several bacteria CDS
... Retrieving bacterial proteomes from the NCBI is easy (you can use the search in this forum to find out more about that). However, coming up with a list that meets your criteria sounds like a lot of manual work, I don't know how you think that some script would help you there.. ...
written 6 days ago by
5heikki ♦ 8.3k
0
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103
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Answer:
A: centos and bowtie2
... Bowtie2 isn't present in any CentOS 7 repo. That's why yum says that it can't be found. Why do you think tbb-devel has anything to do with this? It's only relevant if you want to compile Bowtie2 from source. Just download the latest release from Bowtie2 github and make your $PATH aware of the binari ...
written 6 days ago by
5heikki ♦ 8.3k
1
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1
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... > In this approach, tetranucleotide frequencies and scaffold coverages are combined to organize metagenomic sequences into individual bins, which are predicted from initial identification of marker genes in assembled sequences.
>
>..
>
>Despite careful selection of initialization cond ...
written 8 days ago by
5heikki ♦ 8.3k
0
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1
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134
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... Does maxbin use also depth of coverage? That could be the reason as you don't get that dimension with long reads.. ...
written 9 days ago by
5heikki ♦ 8.3k
0
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... And how different where the two genomes? No tool will successfully separate e.g. Escherichia coli O157:H7 Sakai and Escherichia coli O157:H7 EC4115..
...
written 10 days ago by
5heikki ♦ 8.3k
1
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... All bacterial assemblies takes less than 600GB space. Surely a supercomputer has that much space to spare. All bacterial proteomes would be like 100GB, if even that.. ...
written 10 days ago by
5heikki ♦ 8.3k
Latest awards to 5heikki
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5 days ago,
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For A: Script for extracting data from a tab-delimited file
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25 days ago,
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For C: Finding a sequence in a fasta file
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3 months ago,
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For Print all rows that are in specified value range based on specific column as pairs
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For #saveNCBI - it's a joke, right?
Popular Question
5 months ago,
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For #saveNCBI - it's a joke, right?
Commentator
5 months ago,
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For C: Finding a sequence in a fasta file
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5 months ago,
created an answer that was upvoted at least 5 times.
For A: Script for extracting data from a tab-delimited file
Teacher
6 months ago,
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Teacher
7 months ago,
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
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For Bootsrapped tree from a distance matrix
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