Moderator: 5heikki

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5heikki6.6k
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Posts by 5heikki

<prev • 947 results • page 1 of 95 • next >
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Answer: A: Compare two files to get the position
... Assuming those are actually fasta formated files: blastp -query File_2.faa -subject File_1.faa -outfmt '6 qlen length nident sstart send' \ | awk 'BEGIN{OFS=FS="\t"}{if($1==$2 && $1==$3){print $4,$5}}' ...
written 23 hours ago by 5heikki6.6k
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Comment: C: Which laptop will be good for most common and advanced bioinformatics works?
... In the end, MacBooks are also bunch of parts from different companies talking to each other. In my previous job, I had a maxed out 15" MBP and at home I have a maxed out MBA. However, I'm not going to buy another MacBook ever again, the main reason being that I don't like where macOS is going. It wo ...
written 2 days ago by 5heikki6.6k
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Comment: C: Which laptop will be good for most common and advanced bioinformatics works?
... Copying files between Windows and Linux is very easy with Windows 10 since you have Windows Subsystem for Linux, i.e. you can use rsync/scp/whatever. I'm rather enjoying the default Ubuntu it comes with (16.04). In fact, 99% of my time on this laptop I'm just running "Ubuntu Bash" full screen with t ...
written 2 days ago by 5heikki6.6k
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Answer: A: Which laptop will be good for most common and advanced bioinformatics works?
... It really depends what you're going to use it for. At work I get by with Dell Latitude 7280, but I really only use it for making a remote connection to one of my towers (one has 32 cores, 128GB RAM, 512GB SSD and 2TB Raid array, another 48 cores, 256GB RAM, 1TB NVMe SSD, 8TB Raid array) or compute c ...
written 2 days ago by 5heikki6.6k
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Comment: C: What Analysis after Denovo Assembly of RNA-seq of a species?
... http://www.dictionary.com/browse/fishing-expedition ...
written 16 days ago by 5heikki6.6k
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Comment: C: Canu ERROR: File supplied on command line; use -s, -pacbio-raw, -pacbio-correct
... Any particular reason for using 1.4 instead of the latest release (1.6)? edit. just realized OP posted quite a long time ago ...
written 16 days ago by 5heikki6.6k
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Comment: C: military application of bioinformatics
... In your opinion, does [this paper][1] represent a crime against humanity? [1]: http://www.nature.com/nature/journal/v486/n7403/full/nature10831.html ...
written 19 days ago by 5heikki6.6k
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Comment: C: military application of bioinformatics
... I deleted it. It's offtopic. This is not a politics forum. Should us humans and scientists write something about an apartheid regime following every question posted by someone from Israel? I would delete those posts too. Something to consider. I'm not going to engage in any further debate concerning ...
written 19 days ago by 5heikki6.6k
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Answer: A: military application of bioinformatics
... [Mash][1] was developed at least in part in the context of biodefence. [1]: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0997-x ...
written 19 days ago by 5heikki6.6k
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Comment: C: Align two microbial genomes -- is mummer still the way to go?
... I would use MUMmer over Mauve.. ...
written 4 weeks ago by 5heikki6.6k

Latest awards to 5heikki

Teacher 19 hours ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 21 hours ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Bootsrapped tree from a distance matrix
Good Answer 7 weeks ago, created an answer that was upvoted at least 5 times. For A: fasta header with leading zeros
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 10 weeks ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 3 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Scholar 3 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Scholar 3 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 5 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Finding a sequence in a fasta file
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Finding a sequence in a fasta file
Scholar 6 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 7 months ago, created an answer that has been accepted. For A: Rfam, cmsearch and cmscan
Popular Question 7 months ago, created a question with more than 1,000 views. For Are old versions of NCBI's nr stored somewhere?
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Finding a sequence in a fasta file

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