Moderator: Leszek
Leszek ♦ 4.0k
- Reputation:
- 3,980
- Status:
- Trusted
- Location:
- IIMCB, Poland
- Website:
- http://bioinfoexpert.com/
- Twitter:
- lpryszcz
- Scholar ID:
- Google Scholar Page
- Last seen:
- 3 weeks, 2 days ago
- Joined:
- 8 years, 6 months ago
- Email:
- l**********@gmail.com
I’m bioinformatician with background in molecular biology and biotechnology fascinated by technological developments. Recently, I’m actively working with Next-Generation Sequencing (NGS) data.
Posts by Leszek
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... Happy to see not only me is `spamming` about #NGSchool ;) As always, strongly recommend having look at #NGSchool2018 programme :) **Registration till 30 June!** ...
written 12 months ago by
Leszek ♦ 4.0k
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... What's STAMP? I'm trying to plot weblogo from count dictionary ie. `{'A': [3, 7, 0, 2, 1], 'C': [0, 0, 5, 2, 6], 'G': [0, 0, 0, 3, 0], 'T': [4, 0, 2, 0, 0]}` ...
written 18 months ago by
Leszek ♦ 4.0k
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... you can post your questions regarding redundans / heterozygous genome assembly in https://groups.google.com/forum/#!forum/redundans
give more details, what is the species, expected genome size, what kind of libraries / assembler you are usings etc ...
written 2.2 years ago by
Leszek ♦ 4.0k
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... cat file.fastq | python fastq_id_parser.py file_with_ids.txt > file_with_selected_ids.fastq ...
written 2.2 years ago by
Leszek ♦ 4.0k
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... you need to add the path to GapCloser to your system PATH. Have a look how to do it: https://github.com/lpryszcz/redundans/issues/23 ...
written 2.6 years ago by
Leszek ♦ 4.0k
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... IIMCB (http://iimcb.gov.pl) is the top-ranked Polish research institute in the field of biology. The institute provides cutting-edge equipment and facilities, Illumina Nextseq500, strong computational cluster, and a fully functional zebrafish facility. IIMCB is committed to provide a supportive and ...
written 2.9 years ago by
Leszek ♦ 4.0k
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... Slightly cheaper alternative, dedicated especially for young scientists from central Europe (V4 region): https://www.biostars.org/p/196803/ or http://ngschool.eu/ ...
written 3.0 years ago by
Leszek ♦ 4.0k
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... I'd like to invite you to [**NGSchool2016: Summer School in Bioinformatics & NGS Data Analysis**][1] that will be held on **August 14-21, 2016 in [Dolný Smokovec, Slovakia][2]** ([High Tatras][3]).
The course consists of series of lectures and hands-on workshops, covering various aspects of Co ...
written 3.0 years ago by
Leszek ♦ 4.0k
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... good point. we are involved in very challenging genomes (2-3Gb plants), but unfortunately for these challenging genomes there is no good reference to compare with... ...
written 3.2 years ago by
Leszek ♦ 4.0k
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... the gaps can be filled ie using GapCloser, removing most of Ns from the assembly ...
written 3.2 years ago by
Leszek ♦ 4.0k
Latest awards to Leszek
Epic Question
5 weeks ago,
created a question with more than 10,000 views.
For Genbank To Gtf Converter
Epic Question
7 weeks ago,
created a question with more than 10,000 views.
For Genbank To Gtf Converter
Epic Question
7 weeks ago,
created a question with more than 10,000 views.
For Plotting Density Of Snps On Chromosomes
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Scaffolding: Is This Legit?
Scholar
7 months ago,
created an answer that has been accepted.
For A: Recommendations For Heterozygous Genome Assembly Software
Popular Question
7 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Great Question
7 months ago,
created a question with more than 5,000 views.
For Genbank To Gtf Converter
Popular Question
7 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Good Answer
13 months ago,
created an answer that was upvoted at least 5 times.
For A: Phylogenetic Trees
Great Question
15 months ago,
created a question with more than 5,000 views.
For Plotting Density Of Snps On Chromosomes
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Poly(A) Tail From Rna-Seq?
Popular Question
16 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Popular Question
17 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Great Question
20 months ago,
created a question with more than 5,000 views.
For Looking For A Recommendation To Perform A De Novo Assembly With Miseq Data Of Lengths 2X250Bp
Popular Question
21 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Great Question
21 months ago,
created a question with more than 5,000 views.
For Looking For A Recommendation To Perform A De Novo Assembly With Miseq Data Of Lengths 2X250Bp
Teacher
21 months ago,
created an answer with at least 3 up-votes.
For A: Scaffolding: Is This Legit?
Epic Question
21 months ago,
created a question with more than 10,000 views.
For Plotting Density Of Snps On Chromosomes
Great Question
21 months ago,
created a question with more than 5,000 views.
For Genbank To Gtf Converter
Popular Question
21 months ago,
created a question with more than 1,000 views.
For How To Find Stranded Rna-Seq Experiments Data
Student
21 months ago,
asked a question with at least 3 up-votes.
For Short Read Aligner - Output To Bam/Sam Only Aligned Reads
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