User: ahaswer

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ahaswer10
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10
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New User
Location:
Czech Republic
Last seen:
1 month, 2 weeks ago
Joined:
4 years, 11 months ago
Email:
k****************@gmail.com

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Posts by ahaswer

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Circos: how to draw ribbons?
... Have you been working with circos previosly? If so, how your circos.conf file looks like? In general your link data file should have this structure: genom1 region1_start region1_end genom2 region2_start region2_end e.g. hs1 100 200 hs2 250 300 hs1 400 550 hs3 500 750 hs2 600 700 h ...
written 19 months ago by ahaswer10
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exonerate error while building index
... Hello, I want to use exonerate-server. Therefore I've created database file using fasta2esd and then I've tried to build the index using esd2esi, but I didn't work for me. It prints error while running esd2esi: esd2esi Chr1.esd Chr1.esi ** Message: Building index ** FATAL ERROR **: Unknown or irr ...
software error exonerate written 2.7 years ago by ahaswer10 • updated 7 months ago by dukecomeback40
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Comment: C: Mapping transcripts on reference genome
... While using GMAP or Blat only 5-8% of overall transcripts maps to the genome. Most of them are rather short. The reference genome is 100% complete, without any fragmentation. Also coverage of transcripts is sufficient. I just wonder if there is any dedicated software for such long sequences. I will ...
written 2.7 years ago by ahaswer10
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Mapping transcripts on reference genome
... Hello, could you recommend some tool for mapping transcripts on reference genome. By transcripts I mean FASTA sequences 150-8000 bp long. I've tried GMAP and Blat but without satisfying effect. ...
genome sequence rna-seq written 2.7 years ago by ahaswer10
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Searching Annotation For Microarray Gene Expression Data.
... Hello, I'm using bioconductor packages for microarray data analysis. How can I find annotations (from Bioconductor AnnotationData Packages) for microarray gene expression data that fit to my data best? I mean is there any way to search such annotation by typing specified Gene Expression Omnibus GPL ...
geo R bioconductor gene-expression annotation written 4.6 years ago by ahaswer10

Latest awards to ahaswer

Popular Question 19 months ago, created a question with more than 1,000 views. For Searching Annotation For Microarray Gene Expression Data.
Popular Question 21 months ago, created a question with more than 1,000 views. For Mapping transcripts on reference genome

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